RetrogeneDB ID: | retro_gacu_5 | ||
Retrocopy location | Organism: | Stickleback (Gasterosteus aculeatus) | |
| Coordinates: | groupIV:5767957..5769001(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSGACG00000017178 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | P2RY2 (2 of 2) | ||
| Ensembl ID: | ENSGACG00000008233 | ||
| Aliases: | None | ||
| Description: | purinergic receptor P2Y, G-protein coupled, 2 [Source:HGNC Symbol;Acc:8541] |
Retrocopy-Parental alignment summary:
>retro_gacu_5
TCAGCGAGAAGTAGCATCACCATGGAGACGGTCATCAGCAGCCCCGCTGAGCGGAACCAATCGACGCCGTTCGTCACCAT
CTTCAACTCTAGCTGCCGCTTTGACGAGGAGTTCAAATACATCCTGCTGCCCGTGTCCTACAGCCTGGTGTTTGTGGTCG
GCCTGGTGCTCAACGCTGCGGCTCTGGGGTTGTTCCTGAAGATGCGTCCGTGGAACCCCAGCACAGTGTTCATGTTCCAT
CTGGCCCTGTCCGACTTCCTGTACGTGCTCTCCCTCCCCACCCTCATCTACTACTACGCCAACCGCAGCGACTGGCCTTT
CGGATTGGCCGCTTGCAAAATCGTGCGCTTCCTCTTCTACGCCAACCTCTACTGCAGCATCCTCTTCCTCACCTGCATCA
GCGTGCACCGCTATCTGGGCATCTGCCACCCAATCAAGACGCTGACCACCGTGAAGTCCCGCCATGCCCACCTGGTGTGC
GGCACGGTGTGGGCTGTGGTGAGCGTGTGCCTGGTGCCCAACCTCATCTTCGTCACCACCTCCAGGAGGGAGAATGACAC
CCTGTGCCACGACACAACCAGCCAGGAGGCCTTCGAGGAGTATGTGGACTACAGCTCCGTCGTCATGGTGCTCCTGTTTG
TAATCCCTTTCCTGGTCATTGTGGCGTGCTACTGCTTGATGGCGCGCACCCTGTGCCAACCCAGACGCGGGTTACCTGCC
GGCCGCCAGGGCGCCGCCTCCCACCAGAAGTCCATCAAGCTCATCGTGGTGGTGCTGGTGGTGTTCGCGTTGAGCTTCGT
CCCGTTCCACGTCACGCGGACGCTCTACTACACCGCCCGCGTGTTAGGCCGTAACTGTGAATACCTCAACATCGTCAACT
TTACGTACAAGATCACCAGGCCGCTGGCGAGCATCAACAGCTGTATCGACCCCATCCTTTATTTCCTGGCCGGGGATCAC
TACCGGTCCAGAATGATGTCCGTCCTGACGGGAGGAAGGCCGAAGACAAGCGTCCAGGCACGAGAACAGGAACAAACCCG
GCTG
ORF - retro_gacu_5 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 51.92 % |
| Parental protein coverage: | 95.4 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | NNVTSQTNYSNFYCRFEERFKYILLPVSYSLVFVIGLALNATALYVMLFRTKRWKSSTIYMFNLTVCDTL |
| N..T......N..CRF.E.FKYILLPVSYSLVFV.GL.LNA.AL...L.....W..ST..MF.L...D.L | |
| Retrocopy | NQSTPFVTIFNSSCRFDEEFKYILLPVSYSLVFVVGLVLNAAALGLFL-KMRPWNPSTVFMFHLALSDFL |
| Parental | YVLTLPFLIYYYADENDWPFSEPLCKIIRFLFYTNLYGSIMFLCCISLHRFIGVCYPVRSLSWVSARRAK |
| YVL.LP.LIYYYA...DWPF....CKI.RFLFY.NLY.SI.FL.CIS.HR..G.C.P...L..V..R.A. | |
| Retrocopy | YVLSLPTLIYYYANRSDWPFGLAACKIVRFLFYANLYCSILFLTCISVHRYLGICHPIKTLTTVKSRHAH |
| Parental | LVSVAVWACVLLCQAPILYFSRTSKSESVRICYDTTSPDLFDDFLLYSSAVSVLMFALPFMVVMVCYGLM |
| LV...VWA.V..C..P.L.F..TS..E....C.DTTS...F.....YSS.V.VL.F..PF.V...CY.LM | |
| Retrocopy | LVCGTVWAVVSVCLVPNLIFVTTSRRENDTLCHDTTSQEAFEEYVDYSSVVMVLLFVIPFLVIVACYCLM |
| Parental | VRKLLEPGWASEGGERGGLSARRLKQKSVKMIIVVLATFMICFLPFHLTRSLYYSFRYL-RQVDPSQASS |
| .R.L..P......G..G..S.....QKS.K.I.VVL..F...F.PFH.TR.LYY..R.L.R......... | |
| Retrocopy | ARTLCQPRRGLPAGRQGAAS----HQKSIKLIVVVLVVFALSFVPFHVTRTLYYTARVLGRNCEYLNIVN |
| Parental | VAYKVTRPLASTNSCVDPILYFLAGQNVRSSL |
| ..YK.TRPLAS.NSC.DPILYFLAG...RS.. | |
| Retrocopy | FTYKITRPLASINSCIDPILYFLAGDHYRSRM |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Gasterosteus aculeatus was not studied using RNA-Seq expression data.
Gasterosteus aculeatus was not studied using ChIP-Seq data.
Gasterosteus aculeatus was not studied using EST data.
Gasterosteus aculeatus was not studied using FANTOM5 data.
retro_gacu_5 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_gacu_5 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Gasterosteus aculeatus | ENSGACG00000008233 | 1 retrocopy |
retro_gacu_5 ,
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