>retro_ggal_24
CTCTATAGGTGTAGGTACCCGTAGACAATCAAAGGACTTTTGGATTTATCAGCTATAAAACCTGCTGTTTTTCATCTGGA
CAGCAGTTCCTCTCCCACAGACCCTGTGTGGGATATTGCTGGGATTCACCCACTCCCTTCTGCTTTAGTCACACCTCAGT
TTCCTTCCTTGCCTGTCACCTTCATGCTCCTGCAAGACACTAAGGCTCACTTTGAGATGCAGCAGCCATCCCCTTCCATC
CCACCTGCCCATCCTGACATCCAGCTGAAAAGCCTGCCTTTTTACAATGTGCTTGATGTACTACTACTTAACAAGCCTAC
AAGTTTAGTACAGAGCAGTATTCAGAGGTTCCAAGAATAGTTTTTCCTCTTTGCTTTAACACCTCAGCAGGTCAGAGAAA
TTTGTATTTCCAGGGACTTCTTTCCAGGGGACAAAAGAGATTACCAAGTCCAAGTGCAGCTAAGATTATGGCAAGCAGAG
ACAAACTGCCCTCAAGAAGATAATTACCCTAACAGTTTGTGCATTAAAGTAAATTGGAAGCTGTTTCCATTGCTGGATAT
GCTCCACCAAATGGAATTAAACAGAAGGAATCTGGATGCCCCTTGAATATAACATCTCTAGATAGGCTGTTGTCAGCAGT
GCCAGAATAGATTTCTATTTCCTGGGCTTCTGAAATTGGAAAGAATTACTCAATGTCTCTGTATCTCATATGTCATCTCA
CTTCAGCTATGCTTTTGCAGAGGGTAAAAGTGAAAGGTATCCAAAACCCTGATTATTCTAGAGCTCTAATTAAAGAAGAA
CTAAGTACGGATCCTAACTGCAGACTGGCAAGTTCACTGTCATCTCTGATGTACTCTCTGTGAAAAATGAGACTGTCAAT
CCCTACTTGCACACACCTGCAATGTTTTGATGCTACTCTTCATCTTCAAATGAATGAT
ORF - retro_ggal_24 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
75.47 % |
Parental protein coverage: |
51.29 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | LYRRRYPRTIEGLSDLSAIKPAVFSLDSSSSPVEPDLAVAGIHPLPSTSVTPQSPSSPVSSVLLQDTKAH |
| LYR.RYP.TI.GL.DLSAIKPAVF.LDSSSSP..P....AGIHPLPS..VTPQ.PS.PV...LLQDTKAH |
Retrocopy | LYRCRYP*TIKGLLDLSAIKPAVFHLDSSSSPTDPVWDIAGIHPLPSALVTPQFPSLPVTFMLLQDTKAH |
|
Parental | FEMQQPSPPIPPVHPDVQLKSLPFYDVLDVLI--KPTSLVQSSIQRFQEKFFIFALTPQQVREICISRDF |
| FEMQQPSP.IPP.HPD.QLKSLPFY.VLDVL...KPTSLVQSSIQRFQE.FF.FALTPQQVREICISRDF |
Retrocopy | FEMQQPSPSIPPAHPDIQLKSLPFYNVLDVLLLNKPTSLVQSSIQRFQE*FFLFALTPQQVREICISRDF |
|
Parental | LPGGRRDYTVQVQLRLCLAETSCPQEDNYPNSLCIKVNGKLFPL-PGYAPPPKNGIEQKRPGRPLNITSL |
| .PG..RDY.VQVQLRL..AET.CPQEDNYPNSLCIKVN.KLFPL..GYAPP..NGI.QK..G.PLNITSL |
Retrocopy | FPGDKRDYQVQVQLRLWQAETNCPQEDNYPNSLCIKVNWKLFPL<AGYAPP--NGIKQKESGCPLNITSL |
|
Parental | VRLSSAVPNQISISWASEIGKSYSMSVYLVRQLTSAMLLQRLKMKGIRNPDHSRALIKEKLTADPDSEIA |
| .RL.SAVP..ISISWASEIGK.YSMS.YL...LTSAMLLQR.K.KGI.NPD.SRALIKE.L..DP....A |
Retrocopy | DRLLSAVPE*ISISWASEIGKNYSMSLYLICHLTSAMLLQRVKVKGIQNPDYSRALIKEELSTDPNCRLA |
|
Parental | TTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNE |
| ..S...SLM..L.KMRL.IP....TCTHLQCFDA.L.LQMN. |
Retrocopy | --SSLSSLMYSL*KMRLSIP----TCTHLQCFDATLHLQMND |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
6 .83 RPM |
20 .43 RPM |
SRP007412_cerebellum |
8 .37 RPM |
37 .94 RPM |
SRP007412_heart |
4 .88 RPM |
7 .99 RPM |
SRP007412_kidney |
7 .75 RPM |
12 .95 RPM |
SRP007412_liver |
4 .57 RPM |
6 .57 RPM |
SRP007412_testis |
2 .11 RPM |
15 .51 RPM |
Gallus gallus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ggal_24 retrocopy.
Gallus gallus was not studied using FANTOM5 data.
retro_ggal_24 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggal_24 has 0 orthologous retrocopies within neognath group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.