>retro_ggor_1018
ATGCCGTCCCGGGCTGAGGACTATGAAGTGTTGTACACCATTGGCACAGGCTCCTATGGCTGCTGCCAGAAGATCTGGAG
GAAGAGTGACAGCAAGATATTAGTTTGGAAAGAACTTGATTATGGCTTCATGACAGAAGCTGAGAAACAGATGCTTATTT
CTGAAGTGAATTTGCTTTGTGAACTGAAAAATCCAAACGTCGTTCATTACTATGATCGTATTATTGACCAGACCAACACA
ACACTGTACATTGTAATGGAATATTGTGAAGAAGGAGACCTGGCTAGTGTAATTACAAAGGGAACCAAGGAAAGGCAATA
CTTAGATGAAGAGTTTGTTCTTCGAGTGACGACTCAGTTGACTCTGGCCCTGAAGTAATGCCACAGACGAAGTGATGGTG
ATCATACTGTAGTGTGTCGGGATCTGAAACCAGCCAGTGTTTTCCTGGATGGGAAGCAAAACATCAAGCTTGGAGATTTG
GGGCTAGCCGGAATATTAAACCACGACACGAGTTTTGCAAACACATTTGTTGGCACACCTTATTACATGTCTCCTGAACA
AACGAATCACATGTCCTACAATGAGAAACCAGATATCTGGTCATTGGGCTGCTTGCCCTATGAGTCACGTGCATTAATGC
CTCCATTTACAGCCAGAAAGAACTCGCTGGAAAAATCAGAGAAGGCAAATTCAGGCGAATTC
ORF - retro_ggor_1018 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
83.33 % |
Parental protein coverage: |
52.36 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MPSRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRY |
| MPSRAEDYEVLYTIGTGSYG.CQKI.RKSD.KILVWKELDYG.MTEAEKQML.SEVNLL.ELK.PN.V.Y |
Retrocopy | MPSRAEDYEVLYTIGTGSYGCCQKIWRKSDSKILVWKELDYGFMTEAEKQMLISEVNLLCELKNPNVVHY |
|
Parental | YDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHR |
| YDRIID.TNTTLYIVMEYCE.GDLASVITKGTKERQYLDEEFVLRV.TQLTLALK.CHRRSDG.HTV..R |
Retrocopy | YDRIIDQTNTTLYIVMEYCEEGDLASVITKGTKERQYLDEEFVLRVTTQLTLALK*CHRRSDGDHTVVCR |
|
Parental | DLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNCMSYNEKSDIWSLGCLLYELC |
| DLKPA.VFLDGKQN.KLGD.GLA.ILNHDTSFA.TFVGTPYYMSPEQ.N.MSYNEK.DIWSLGCL.YE.. |
Retrocopy | DLKPASVFLDGKQNIKLGDLGLAGILNHDTSFANTFVGTPYYMSPEQTNHMSYNEKPDIWSLGCLPYESR |
|
Parental | ALMPPFTAFSQK-ELAGKIREGKF |
| ALMPPFTA.....E...K...G.F |
Retrocopy | ALMPPFTARKNSLEKSEKANSGEF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
1 .92 RPM |
SRP007412_cerebellum |
0 .00 RPM |
0 .00 RPM |
SRP007412_heart |
0 .00 RPM |
0 .16 RPM |
SRP007412_kidney |
0 .00 RPM |
0 .25 RPM |
SRP007412_liver |
0 .00 RPM |
0 .08 RPM |
SRP007412_testis |
0 .10 RPM |
114 .89 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1018 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggor_1018 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
9 retrocopies.