RetrogeneDB ID:

retro_ggor_1018

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:14:638978..639680(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NEK2
Ensembl ID:ENSGGOG00000005439
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1018
ATGCCGTCCCGGGCTGAGGACTATGAAGTGTTGTACACCATTGGCACAGGCTCCTATGGCTGCTGCCAGAAGATCTGGAG
GAAGAGTGACAGCAAGATATTAGTTTGGAAAGAACTTGATTATGGCTTCATGACAGAAGCTGAGAAACAGATGCTTATTT
CTGAAGTGAATTTGCTTTGTGAACTGAAAAATCCAAACGTCGTTCATTACTATGATCGTATTATTGACCAGACCAACACA
ACACTGTACATTGTAATGGAATATTGTGAAGAAGGAGACCTGGCTAGTGTAATTACAAAGGGAACCAAGGAAAGGCAATA
CTTAGATGAAGAGTTTGTTCTTCGAGTGACGACTCAGTTGACTCTGGCCCTGAAGTAATGCCACAGACGAAGTGATGGTG
ATCATACTGTAGTGTGTCGGGATCTGAAACCAGCCAGTGTTTTCCTGGATGGGAAGCAAAACATCAAGCTTGGAGATTTG
GGGCTAGCCGGAATATTAAACCACGACACGAGTTTTGCAAACACATTTGTTGGCACACCTTATTACATGTCTCCTGAACA
AACGAATCACATGTCCTACAATGAGAAACCAGATATCTGGTCATTGGGCTGCTTGCCCTATGAGTCACGTGCATTAATGC
CTCCATTTACAGCCAGAAAGAACTCGCTGGAAAAATCAGAGAAGGCAAATTCAGGCGAATTC

ORF - retro_ggor_1018 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.33 %
Parental protein coverage: 52.36 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMPSRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRY
MPSRAEDYEVLYTIGTGSYG.CQKI.RKSD.KILVWKELDYG.MTEAEKQML.SEVNLL.ELK.PN.V.Y
RetrocopyMPSRAEDYEVLYTIGTGSYGCCQKIWRKSDSKILVWKELDYGFMTEAEKQMLISEVNLLCELKNPNVVHY
ParentalYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHR
YDRIID.TNTTLYIVMEYCE.GDLASVITKGTKERQYLDEEFVLRV.TQLTLALK.CHRRSDG.HTV..R
RetrocopyYDRIIDQTNTTLYIVMEYCEEGDLASVITKGTKERQYLDEEFVLRVTTQLTLALK*CHRRSDGDHTVVCR
ParentalDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNCMSYNEKSDIWSLGCLLYELC
DLKPA.VFLDGKQN.KLGD.GLA.ILNHDTSFA.TFVGTPYYMSPEQ.N.MSYNEK.DIWSLGCL.YE..
RetrocopyDLKPASVFLDGKQNIKLGDLGLAGILNHDTSFANTFVGTPYYMSPEQTNHMSYNEKPDIWSLGCLPYESR
ParentalALMPPFTAFSQK-ELAGKIREGKF
ALMPPFTA.....E...K...G.F
RetrocopyALMPPFTARKNSLEKSEKANSGEF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 1 .92 RPM
SRP007412_cerebellum 0 .00 RPM 0 .00 RPM
SRP007412_heart 0 .00 RPM 0 .16 RPM
SRP007412_kidney 0 .00 RPM 0 .25 RPM
SRP007412_liver 0 .00 RPM 0 .08 RPM
SRP007412_testis 0 .10 RPM 114 .89 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1018 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1018 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 5 parental genes, and 9 retrocopies.

Species Parental gene accession Retrocopies number
Homo sapiens ENSG000001176504 retrocopies
Gorilla gorilla ENSGGOG00000005439 1 retrocopy
retro_ggor_1018 ,
Myotis lucifugus ENSMLUG000000112811 retrocopy
Pan troglodytes ENSPTRG000000019532 retrocopies
Rattus norvegicus ENSRNOG000000044871 retrocopy



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