RetrogeneDB ID: retro_ggor_102

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 11:1556766..1557405(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGGOG00000016620
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: ENSG00000204571
• Ensembl ID: ENSGGOG00000016395
• Aliases: None
• Description: None

Sequence

>retro_ggor_102
ATGGGCTGCTGTGGCTGCTCTGGAGGCTGTGGCTCCGGCTGTGGGGGCTGCGGCTCCGGCTGTGGGGGCTGCGGCTCCGG
CTGTGGGGGCTGCGGCTCCGGCTGTGGGGGCTGTGGCTCCAGCTGCTGTGTGCCCGTCTGCTGCTGCAAACCCGTGTGCT
GCTGTGTGCCTGCCTGTTCCTGCACCAGCTGTGGCTCCTGTGGGAGCTCCAAGGGGGGCTGTGGCTGCTGTGGGGGGTCC
AAGGGGGGCTGTGGCTCTTGTGGGAGCTCCAAGGGGGGCTGTGGCTGCTGTGGGGGTTCCAAGGGGGGCTGTGGCTCCTG
TGGGGTCTCCAAAGGAGGCTGTGGCTCTTGTGGCTGCTACCAGGGCAGCTGCTATAAGCGCTGCTGCTGCTCTTCAGGCT
GTGGGTCATCCTGCTGCCAGTCCAGCTGCTGCAAGCCCTGCTGCTGCCAGTCCAGCTGCTGCAAGCCCTGCTGCTGCCAG
TCCAGCTGCTGCAAGCCCTGCTGCTGCCAGTCCAGCTGCTGCAAGCCCTGCTGCTCCTCCTCAGGTTGTGGGTCATCCTG
CTGCCAGTCCAGTTGCTGCAATCCCTGCTGCTCCCAGTCTAGTTGCTGTGTCCCTGTGTGCTGCCAGTGTAAGATCTGA

Alignment

ORF - retro_ggor_102 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.47 %
• Parental protein coverage: 90.87 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSCGSCGGSK
          GC....GGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPVCCCKPVCCCVPACSC.SCGSCG.SK
Retrocopy GCCGCSGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPVCCCKPVCCCVPACSCTSCGSCGSSK

Parental  GGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQSSCCKPCCCS
          GGCG.CGGSKGGCGSCG.SKGGCG.CGGSKGGCGSCG.SKGGCGSCG...G.C....C..S.C...CC.S
Retrocopy GGCGCCGGSKGGCGSCGSSKGGCGCCGGSKGGCGSCGVSKGGCGSCGCYQGSCYKRCCCSSGCGSSCCQS

Parental  SGCGSSCCQSSCCKPCCCQSSCCVPVCCQSSCCKPHCCQSSCCRSCCSRSSCCRSCCSRSSCCRSCCSQ
          S.C...CCQSSCCKPCCCQSSCC.P.CCQSSCCKP.CC.SS.C.S.C..SSCC..CCS.SSCC...C.Q
Retrocopy SCCKPCCCQSSCCKPCCCQSSCCKPCCCQSSCCKP-CCSSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.14 RPM
SRP007412_cerebellum	0.00 RPM	0.08 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.04 RPM	0.12 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.00 RPM	0.52 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_102 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_102 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000016395	1 retrocopy	retro_ggor_102 ,