RetrogeneDB ID: retro_ggor_1052

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 14:44781002..44781188(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENSG00000227097
• Ensembl ID: ENSGGOG00000024725
• Aliases: None
• Description: None

Sequence

>retro_ggor_1052
ATGGACACCAGCCGTGTGCGGCATATCAAGCAAGCCTGGGGCACCATGGTACTGGGCATGACCAGCTCTCAGGGACAGTG
TATGGGGATGGACATGGAATTTGTGGACAACAGGAGCCACTCCATTATCCACAATGTCAAAGGCCCCGTGTGCAAGGATG
ACGTGCTCACCCTGTTGGAGTCAAAG

Alignment

ORF - retro_ggor_1052 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.52 %
• Parental protein coverage: 89.86 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESE
          MDTSRV..IK.A..T.VLG.T.SQGQC.....EF.D..S.SII.NVKGPV...DVLTLLES.
Retrocopy MDTSRVRHIKQAWGTMVLGMTSSQGQCMGMDMEFVDNRSHSIIHNVKGPVCKDDVLTLLESK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	55.10 RPM
SRP007412_cerebellum	0.00 RPM	85.89 RPM
SRP007412_heart	0.00 RPM	108.22 RPM
SRP007412_kidney	0.00 RPM	182.69 RPM
SRP007412_liver	0.00 RPM	215.51 RPM
SRP007412_testis	0.00 RPM	63.92 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1052 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1052 has 2 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Homo sapiens	retro_hsap_1352
Pan troglodytes	retro_ptro_927

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000010726	12 retrocopies	retro_cjac_1404, retro_cjac_1744, retro_cjac_1893, retro_cjac_195, retro_cjac_23, retro_cjac_2516, retro_cjac_2582, retro_cjac_3003, retro_cjac_339, retro_cjac_4170, retro_cjac_551, retro_cjac_715,
Gorilla gorilla	ENSGGOG00000024725	2 retrocopies	retro_ggor_1052 , retro_ggor_95,