RetrogeneDB ID: retro_ggor_1060

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 14:51408317..51408914(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SAP25
• Ensembl ID: ENSGGOG00000013708
• Aliases: None
• Description: None

Sequence

>retro_ggor_1060
ATGACTCCACTAGCGCCCTGGGACCCCAAGTACGAAGCCAAAGCAGGACCTCGGCTGGTGTGGGGGGCCAACTGTAGCCC
AGGAGCCTCGTTCTCAGGCCGGACGGTGTGTCACCCCTCGTTCTGGCCGCTGTACGAGGCAGCCTCGGGCAGGGGTCTCA
GGCCCGTGGCCCCTGCCACAGGGCATTGGAATGGACAGCAGGCGCCCCCGGATGCAGGGTTCCCGGTGATGTGCTGTGAA
GACGTCTTCCTCTCGGACCCTCTGCTGCCCCGGGGGCAGCGTGTCCCCCTGTACCTGTCCAAGGCCCCCCAGCAGATGAT
GGGCTCCCTGAAACTGCTGCCGCCACCCCCCATCATGTCTGCCAAGGTTCTCCCCCGCCTGTCACTCTCCCTGGGCCCCT
CCACTGCCTGGCTCAGCGGGCCGGAGCTGATCGCTCTCACTGGCCTGCTGCAGGTGAGCCAGGGGGAGCCTAGGCCCAGC
TCCTCCGCTGCTGGCCCCCCAGACCCTACCTCTGACCCACCCAGCCCCTGTGGTAGCCCCAGCAGTTCTCAGAGTGCTGA
CCTCTCTCTCCCACAGACCCCAGACACCCATTGTCCA

Alignment

ORF - retro_ggor_1060 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.47 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTPLAPWDPKYEAKAGPRLVWGANCSSGASFSGRTLCHPSFWPLYEAASGRGLRPVAPATGHWNGQQAPP
          MTPLAPWDPKYEAKAGPRLVWGANCS.GASFSGRT.CHPSFWPLYEAASGRGLRPVAPATGHWNGQQAPP
Retrocopy MTPLAPWDPKYEAKAGPRLVWGANCSPGASFSGRTVCHPSFWPLYEAASGRGLRPVAPATGHWNGQQAPP

Parental  DAGFPVVCCEDVFLSDPLLPRGQRVPLYLSKAPQQMMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSG
          DAGFPV.CCEDVFLSDPLLPRGQRVPLYLSKAPQQMMGSLKLLPPPPIMSA.VLPR.S.S.GPSTAWLSG
Retrocopy DAGFPVMCCEDVFLSDPLLPRGQRVPLYLSKAPQQMMGSLKLLPPPPIMSAKVLPRLSLSLGPSTAWLSG

Parental  PELIALTGLLQMSQGEPRPSSSAVGPPDHTSDPPSPCGSPSSSQGADLSLPQTPDTHCP
          PELIALTGLLQ.SQGEPRPSSSA.GPPD.TSDPPSPCGSPSSSQ.ADLSLPQTPDTHCP
Retrocopy PELIALTGLLQVSQGEPRPSSSAAGPPDPTSDPPSPCGSPSSSQSADLSLPQTPDTHCP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	3.12 RPM
SRP007412_cerebellum	0.00 RPM	12.96 RPM
SRP007412_heart	0.00 RPM	3.56 RPM
SRP007412_kidney	0.00 RPM	3.52 RPM
SRP007412_liver	0.00 RPM	4.43 RPM
SRP007412_testis	0.00 RPM	3.94 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1060 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1060 has 2 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Homo sapiens	retro_hsap_1362
Pan troglodytes	retro_ptro_934

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000015273	1 retrocopy	retro_cjac_1085,
Homo sapiens	ENSG00000205307	1 retrocopy	retro_hsap_1362,
Gorilla gorilla	ENSGGOG00000013708	1 retrocopy	retro_ggor_1060 ,
Pongo abelii	ENSPPYG00000017415	1 retrocopy	retro_pabe_1129,
Pan troglodytes	ENSPTRG00000019495	1 retrocopy	retro_ptro_934,