RetrogeneDB ID: retro_ggor_1066

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 14:62688073..62688393(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGGOG00000005359
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSGGOG00000008793
• Aliases: None
• Description: None

Sequence

>retro_ggor_1066
ATGCTTTTAACCAGATTTGAACAGAAGAATGGCCACTTGGCCCAGGTAGAAGTAGATGAGTGTTTGGTTTCATGTGTCAC
GTAACTACTGAAGTTCCTCCCCAGGATGCAATGCCAGGTGGGATTGTACTTCTTGTCACATTCTTTCTTGATATGAGCCG
CAATGTTCTTCTCTATGTTGTATTTCTCCAGCGCCTGAGGAGCACACTCCACTGAGTTCTGTTGCATCTCCTCCGACATG
TCCACATTTTTGATCACGGCCTTTCGGTCGCACATGGTTACCATGGAGAAAGGGGCTGGCCAACTGCCACGGTCCCCTGG

Alignment

ORF - retro_ggor_1066 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.16 %
• Parental protein coverage: 97.3 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MLLTRFEQKNGHLAQVEVDE-VFGFMCHITTEVPPHDAMPGGIVLLVKFLLLDMSRNVLLYVVFLQRLSS
          MLLTRFEQKNGHLAQVEVDE.VFGFMCH.TTEVPP.DAMPGGIVLLV.F..LDMSRNVLLYVVFLQRL.S
Retrocopy MLLTRFEQKNGHLAQVEVDE<VFGFMCHVTTEVPPQDAMPGGIVLLVTFF-LDMSRNVLLYVVFLQRLRS

Parental  ALHRVLLHLFRHVRIFDHGLSVAHGYRGEGGWPTATVSW
          .LH.VLLHL.RHV.IFDHGLSVAHGY.GE.GWPTATV.W
Retrocopy TLH*VLLHLLRHVHIFDHGLSVAHGYHGERGWPTATVPW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.05 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.04 RPM	0.04 RPM
SRP007412_liver	0.03 RPM	0.00 RPM
SRP007412_testis	0.62 RPM	0.00 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1066 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1066 has 1 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Pongo abelii	retro_pabe_1134

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 22 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000009268	3 retrocopies	retro_etel_1297, retro_etel_390, retro_etel_781,
Gorilla gorilla	ENSGGOG00000008793	4 retrocopies	retro_ggor_1066 , retro_ggor_1113, retro_ggor_2055, retro_ggor_3078,
Macaca mulatta	ENSMMUG00000001195	6 retrocopies	retro_mmul_1463, retro_mmul_1723, retro_mmul_1897, retro_mmul_2269, retro_mmul_470, retro_mmul_835,
Pongo abelii	ENSPPYG00000005032	6 retrocopies	retro_pabe_1134, retro_pabe_1198, retro_pabe_1215, retro_pabe_1469, retro_pabe_2371, retro_pabe_2459,
Tupaia belangeri	ENSTBEG00000008820	3 retrocopies	retro_tbel_1196, retro_tbel_1765, retro_tbel_695,