RetrogeneDB ID: | retro_ggor_1102 | ||
Retrocopy location | Organism: | Gorilla (Gorilla gorilla) | |
| Coordinates: | 14:44560997..44561585(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | GCAT | ||
| Ensembl ID: | ENSGGOG00000003987 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_ggor_1102
CAGGTCTGCAGACTCTTTGGAGCTGGCCTTAGCTCGGTCCGCTTCATCCGTGGAACCCAAAGCATCCACAAGAATCTAGA
AGTAAAAATAGCCCGCTTCCACCAGCGGGAGGATGCCATCCTCTATCCCAGCTGTTGTGACGCCAACGCCGGCGTCTTTG
AGGCCCTGCTGAGACCCGAGGACGCAGTCCTGTCGGACGAGCTGAACTGTGCCTCCATCATCCACTGCATCTGCCTGTGC
AAGGCCCACAAGTACCGCTATTGCCACCTGGACGTGGCCGACCTAGAAACCAAGCTTCAGGAGGCCTAGAAGCATCGGCG
GTTCCTGGTGGCCACCGATGGGGCCTTTTCCATGGATGGCGACATCGTGCCCCCGCAGAAGATCTGCCGCCTCGCCTCTA
GATATGGCGCCCTGGTCTTTGTGGATGAATGCCATGCCACTGGCTTCCTGGGACTCACAGGACAGGGCACAGATGAGCTG
CTGGGTGTGATGGGCCAGGTCACCATCATCAACTCCACCCTGGGGAAGGCCCTGGGTGGTGCATCAGGGGGCTACACGAC
AGGGCCTGGGCCCCTGGTGTCACTGCTG
ORF - retro_ggor_1102 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 86.73 % |
| Parental protein coverage: | 51.17 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | QALEEFGAGLSSVRFICGTQSIHKNLEAKIARFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNH |
| Q....FGAGLSSVRFI.GTQSIHKNLE.KIARFHQREDAILYPSC.DANAG.FEALL.PEDAVLSDELN. | |
| Retrocopy | QVCRLFGAGLSSVRFIRGTQSIHKNLEVKIARFHQREDAILYPSCCDANAGVFEALLRPEDAVLSDELNC |
| Parental | ASIIDGIRLCKAHKYRYRHLDMADLEAKLQEAQKHRLRLVATDGAFSMDGDIAPLQEICCLASRYGALVF |
| ASII..I.LCKAHKYRY.HLD.ADLE.KLQEA.KHR..LVATDGAFSMDGDI.P.Q.IC.LASRYGALVF | |
| Retrocopy | ASIIHCICLCKAHKYRYCHLDVADLETKLQEA*KHRRFLVATDGAFSMDGDIVPPQKICRLASRYGALVF |
| Parental | VDECHATGFLGPTGRGTDELLGVMDQVTIINSTLGKALGGASGGYTTGPGPLVSLL |
| VDECHATGFLG.TG.GTDELLGVM.QVTIINSTLGKALGGASGGYTTGPGPLVSLL | |
| Retrocopy | VDECHATGFLGLTGQGTDELLGVMGQVTIINSTLGKALGGASGGYTTGPGPLVSLL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .36 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 4 .96 RPM |
| SRP007412_heart | 0 .00 RPM | 6 .35 RPM |
| SRP007412_kidney | 0 .00 RPM | 7 .61 RPM |
| SRP007412_liver | 0 .00 RPM | 10 .37 RPM |
| SRP007412_testis | 0 .00 RPM | 2 .38 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1102 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggor_1102 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Gorilla gorilla | ENSGGOG00000003987 | 1 retrocopy |
retro_ggor_1102 ,
|
| Nomascus leucogenys | ENSNLEG00000014866 | 1 retrocopy |