RetrogeneDB ID: retro_ggor_1102

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 14:44560997..44561585(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GCAT
• Ensembl ID: ENSGGOG00000003987
• Aliases: None
• Description: None

Sequence

>retro_ggor_1102
CAGGTCTGCAGACTCTTTGGAGCTGGCCTTAGCTCGGTCCGCTTCATCCGTGGAACCCAAAGCATCCACAAGAATCTAGA
AGTAAAAATAGCCCGCTTCCACCAGCGGGAGGATGCCATCCTCTATCCCAGCTGTTGTGACGCCAACGCCGGCGTCTTTG
AGGCCCTGCTGAGACCCGAGGACGCAGTCCTGTCGGACGAGCTGAACTGTGCCTCCATCATCCACTGCATCTGCCTGTGC
AAGGCCCACAAGTACCGCTATTGCCACCTGGACGTGGCCGACCTAGAAACCAAGCTTCAGGAGGCCTAGAAGCATCGGCG
GTTCCTGGTGGCCACCGATGGGGCCTTTTCCATGGATGGCGACATCGTGCCCCCGCAGAAGATCTGCCGCCTCGCCTCTA
GATATGGCGCCCTGGTCTTTGTGGATGAATGCCATGCCACTGGCTTCCTGGGACTCACAGGACAGGGCACAGATGAGCTG
CTGGGTGTGATGGGCCAGGTCACCATCATCAACTCCACCCTGGGGAAGGCCCTGGGTGGTGCATCAGGGGGCTACACGAC
AGGGCCTGGGCCCCTGGTGTCACTGCTG

Alignment

ORF - retro_ggor_1102 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.73 %
• Parental protein coverage: 51.17 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QALEEFGAGLSSVRFICGTQSIHKNLEAKIARFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNH
          Q....FGAGLSSVRFI.GTQSIHKNLE.KIARFHQREDAILYPSC.DANAG.FEALL.PEDAVLSDELN.
Retrocopy QVCRLFGAGLSSVRFIRGTQSIHKNLEVKIARFHQREDAILYPSCCDANAGVFEALLRPEDAVLSDELNC

Parental  ASIIDGIRLCKAHKYRYRHLDMADLEAKLQEAQKHRLRLVATDGAFSMDGDIAPLQEICCLASRYGALVF
          ASII..I.LCKAHKYRY.HLD.ADLE.KLQEA.KHR..LVATDGAFSMDGDI.P.Q.IC.LASRYGALVF
Retrocopy ASIIHCICLCKAHKYRYCHLDVADLETKLQEA*KHRRFLVATDGAFSMDGDIVPPQKICRLASRYGALVF

Parental  VDECHATGFLGPTGRGTDELLGVMDQVTIINSTLGKALGGASGGYTTGPGPLVSLL
          VDECHATGFLG.TG.GTDELLGVM.QVTIINSTLGKALGGASGGYTTGPGPLVSLL
Retrocopy VDECHATGFLGLTGQGTDELLGVMGQVTIINSTLGKALGGASGGYTTGPGPLVSLL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	4.36 RPM
SRP007412_cerebellum	0.00 RPM	4.96 RPM
SRP007412_heart	0.00 RPM	6.35 RPM
SRP007412_kidney	0.00 RPM	7.61 RPM
SRP007412_liver	0.00 RPM	10.37 RPM
SRP007412_testis	0.00 RPM	2.38 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1102 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1102 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000003987	1 retrocopy	retro_ggor_1102 ,
Nomascus leucogenys	ENSNLEG00000014866	1 retrocopy	retro_nleu_1420,