RetrogeneDB ID:

retro_ggor_1396

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:18:10014603..10015614(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000025907
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:RHBDD3
Ensembl ID:ENSGGOG00000012202
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1396
GTGCACCGACTGCTGACCCATGCCCTGGGCCACACGGCCCTGCCGGGCCTGCTCCTGAGCCTGCTGCTCCTGCCCACTGT
GGGCTGGCAGCAGGAGTGCCACCTGGGCACGCTGAGATTCCTGCATGCCTCAGCCCTGCTCGCCCTGGCTTCTGGGCTGC
TGGCAGTGCTGCTGGCAGGCCTTGGGCTGTCCAGTGCAGCCGGCAGCTGTGGATACATGCCTGTCCACCTGGCCATGCTG
GCTGGGGAGGGACACCGCCCTAGATGGCCCCGTGGGGCACGGCCACCGTGGCTGCCGCCGTGGCTGCTGCTTGCCCTGAC
CCCACTGCTCAGCTCTGAGCCACCCTTCCTGCAGCTCCTTTGCGGCCTCCTTGCCGGCCTGGCCTATGCAGCTGGGGCCT
TCCGGTGGCTGGAACCCTCAGAGCGACGGCTGCAGGTGCTGCAGGAGGGCGTCTTGTGCAGGACCTTGGCGGGGTGCTGG
CCCCTGAGGCTCCTTGCCACCCCGGGCAGCCTGGCGGAGCTGCCTGTCACCTATCCTGCCGGAGGGAGGCCTCCCATCCC
TGGACCGCCTTATGTGGCCTCCCCTGACCTCTGGTCCCACTGGGAAGACTCAGCCCTGCCCCCACCAAGCCTGAGGCCTG
TGCAGCCCACCTGGGAGGGCTCCTCAGAGGCAGGCCTGGACTGGGCTGGGGCCAGCTTCTCCCCAGGGACTCCGATGTGG
GCGGCCTTGGATGAGCAGATGCTGCAGGAGGGCATCCAGGCCTCGCTTCTTGACGGGCCAGCCCAGGAACCCCAGAGCGC
ACCATGGCTGTCCAAGTCCTCTGTCTCCTCTCTGCGGCTGCAGCAGCTGGAGCGCATGGGCTTCCCTACGGAGCAGGCGG
TGGTGGCACTGGCAGCCACAGGCCGTGTGGAGGGTGCCGTGTCACTGTTGGTTGGAGGACAAGTGGGCACTGAGACCCTG
GTGACCCATGGAAAGGGTGGGCCTGCCCACTCCAAGGGTCCTGGGCCTCCC

ORF - retro_ggor_1396 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.52 %
Parental protein coverage: 87.31 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVHRLLTHALGHTALPGLLLSLLLLPTVGWQQECHLGTLRFLHASALLALASGLLAVLLAGLGLSSAAGSC
VHRLLTHALGHTALPGLLLSLLLLPTVGWQQECHLGTLRFLHASALLALASGLLAVLLAGLGLSSAAGSC
RetrocopyVHRLLTHALGHTALPGLLLSLLLLPTVGWQQECHLGTLRFLHASALLALASGLLAVLLAGLGLSSAAGSC
ParentalGYMPVHLAMLAGEGHRPRRPRGALPPWLPPWLLLALTPLLSSEPPFLQLLCGLLAGLAYAAGAFRWLEPS
GYMPVHLAMLAGEGHRPR.PRGA.PPWLPPWLLLALTPLLSSEPPFLQLLCGLLAGLAYAAGAFRWLEPS
RetrocopyGYMPVHLAMLAGEGHRPRWPRGARPPWLPPWLLLALTPLLSSEPPFLQLLCGLLAGLAYAAGAFRWLEPS
ParentalERRLQVLQEGVLCRTLAGCWPLRLLAIPGSLAELPVTHPAGVRPPIPGPPYVASPDLWSHWEDSALPPPS
ERRLQVLQEGVLCRTLAGCWPLRLLA.PGSLAELPVT.PAG.RPPIPGPPYVASPDLWSHWEDSALPPPS
RetrocopyERRLQVLQEGVLCRTLAGCWPLRLLATPGSLAELPVTYPAGGRPPIPGPPYVASPDLWSHWEDSALPPPS
ParentalLRPVQPTWEGSSEAGLDWAGASFSPGTPMWAALDEQMLQEGIQASLLDGPAQEPQSAPWLSKSSVSSLRL
LRPVQPTWEGSSEAGLDWAGASFSPGTPMWAALDEQMLQEGIQASLLDGPAQEPQSAPWLSKSSVSSLRL
RetrocopyLRPVQPTWEGSSEAGLDWAGASFSPGTPMWAALDEQMLQEGIQASLLDGPAQEPQSAPWLSKSSVSSLRL
ParentalQQLERMGFPTEQAVVALAATGRVEGAVSLLVGGQVGTETLVTHGKGGPAHSKGPGPP
QQLERMGFPTEQAVVALAATGRVEGAVSLLVGGQVGTETLVTHGKGGPAHSKGPGPP
RetrocopyQQLERMGFPTEQAVVALAATGRVEGAVSLLVGGQVGTETLVTHGKGGPAHSKGPGPP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 6 .19 RPM
SRP007412_cerebellum 0 .00 RPM 6 .58 RPM
SRP007412_heart 0 .00 RPM 2 .47 RPM
SRP007412_kidney 0 .00 RPM 2 .25 RPM
SRP007412_liver 0 .00 RPM 3 .01 RPM
SRP007412_testis 0 .10 RPM 8 .81 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1396 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1396 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000121141 retrocopy
Gorilla gorilla ENSGGOG00000012202 1 retrocopy
retro_ggor_1396 ,



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