RetrogeneDB ID: retro_ggor_1715

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 2b:19215276..19216427(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGGOG00000023872
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: LINC00273
• Ensembl ID: ENSGGOG00000024387
• Aliases: None
• Description: None

Sequence

>retro_ggor_1715
GCAGCGAACCAGAGGCGGACCGTGGTGCCCGGGATCTCACCGCCAGCGGCCTCCAAGCACGAAGGCGGCCCCGCGCGGTA
CCTGAAGCGGCCGACTGGCCTTCGGCGGGCCCGCGGCTCCCCCACCGCCGCCGCCATTGCGGCCAGCCCCCGGAACCCTC
TTCCCTGCGCACGCTGCACGCCGACCCCATACCCTCTGGGCTCCCACCAGGCCCATGCGGGGCGCCGCCGACCTGGTCCC
GAAGGCGCGTGCCTGGGGACAGGGACAACGGGCCAAGCAGTGGCCGGCGGCGGTGCCACACAAGGCAGAGCCAGGGTTGG
TCCCAGAGGGGGCCACCATAGCCTAAGCCGGTGAGCCGCTCAGGGAGAGAGGATATGCGGGCGGGGAGGGGGGCACAGAC
AGGCAAGGCCAGGGACCACAAGGGCAAGGGCACCCGGGAGCCCGCAGAGGGGCGGCTCAGGGAGAAACCTCAGGCAAGGC
CGTGCCACCAGGAAAACATGGCCACGGGATTCCACCGCCACAGATATGAGGGAGGTCCCGCGGCGCCCCACCTAGGAAGC
CGGACTGCCTCCGGCACTCACCAAGACCTGCCTCACGAGCCCGGGTCCCGCCATCGGGACCCTGAAGCGACCTCAGCCAC
AAACCCAACGCCAGGACCACGTTGCTGGTTTCTTGTCCATCCTCCGACACTGTCAAGCTCCGGGAGACCGGCGCGCCCGC
CACTTGGGATGCTTCCCATGGCCAGGCGGCCCAACCCCGTGCCACGCAAACGCGGTTGTCGGCACCGGTCGCTGCTCCTC
AGGGGAGCGGGTGGAGAGCCGGCTCGCAGCGGAGCGGGTCACGCATCGGACGGAAAGCCTGGCACAGCCACCGCTCACGC
AGCCTCCCAACTGCTAGGATGCTAGTCCGGCCCGGCGGGATCCTCCCCCAACTCAGAAGGGGGAGGCACGGGCCACACAG
TAGGCGACGAGCCGCCCTCGGTCCCCACCGCGGAGGACTCTCTCAAGAGAGAGTCAGTAAGAGACTCATCATTCTCTCCC
GAAAGCGGTGAGGTGGATGGCGGCTTGTGTTCCGAGCTCCTGTGGTTTCAGTTGGCCGCGCGTAGAGGAGAGATTTCCAA
TGTTTCCAGAGAGGCGTGAGCCACAGTCATT

Alignment

ORF - retro_ggor_1715 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.08 %
• Parental protein coverage: 84.57 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  AARDRRPLAPGGRGAAPKFGQRTRGGPRCPGSHRQRPSSTK-AAPRLPHRRRRRGQPPEPSSPHSLQAKP
          AA..RR...P...G..P.......GG...P.....RP.....A.PRLPHRRR..GQPPEPSS...L.A.P
Retrocopy AANQRRTVVP---GISPPAASKHEGG---PARYLKRPTGLR<AGPRLPHRRRHCGQPPEPSSLRTLHADP

Parental  KASGRPPGPRGAPPTWSRRRAPEDTDNGPTSGRRRRPTRRIRVWSRTGPPQPKPVSCSWREDPRAGWGAQ
          ..SG.PPGP.GAPPTWSRRR.P.D.DNGP.SGRRR..TR....WS..GPP.PKPVS.S.RED.RAG.GAQ
Retrocopy IPSGLPPGPCGAPPTWSRRRVPGDRDNGPSSGRRRCHTRQSQGWSQRGPP*PKPVSRSGREDMRAGRGAQ

Parental  TGKARDREGKGTREPTEGRLGEKPQARRGHQESTATESHR-RHEGGPVAPRLGRWTALRTHRDPPHEPGS
          TGKARD..GKGTREP.EGRL.EKPQAR..HQE..AT..HR.R.EGGP.AP.LG..TA..TH.D.PHEPGS
Retrocopy TGKARDHKGKGTREPAEGRLREKPQARPCHQENMATGFHRHRYEGGPAAPHLGSRTASGTHQDLPHEPGS

Parental  RQRDHEVTSATNPTPGPCYSFLVHPPTRSSSGRPARPPLGTPPMARRPNPVPRKRGRRHWSLLLRGAGGE
          R.RD.E.TSATNPTPGP...FLVHPPT.SSSGRPARPPLG..PMARRPNPVPRKRG.RH.SLLLRGAGGE
Retrocopy RHRDPEATSATNPTPGPRCWFLVHPPTLSSSGRPARPPLGMLPMARRPNPVPRKRGCRHRSLLLRGAGGE

Parental  LARSGAGHAPEGTPGTATARAASQPLGRRPGTEGSSPDSEGGGAGHTVGDERPSIPTAEDSIKRESVRDS
          .ARSGAGHA..G.PGTATA.AASQ.LG...G..GSSP.SEGGG.GHTVGDE.PS.PTAEDS.KRESVRDS
Retrocopy PARSGAGHASDGKPGTATAHAASQLLGC*SGPAGSSPNSEGGGTGHTVGDEPPSVPTAEDSLKRESVRDS

Parental  AFSPESSEVDGGLCPELLWLQVTTLRGQISNVSREARAAVI
          .FSPES.EVDGGLC.ELLW.Q....RG.ISNVSREA.A.VI
Retrocopy SFSPESGEVDGGLCSELLWFQLAARRGEISNVSREA*ATVI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.00 RPM	0.00 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1715 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1715 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000024387	1 retrocopy	retro_ggor_1715 ,