RetrogeneDB ID:

retro_ggor_1715

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:2b:19215276..19216427(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000023872
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:LINC00273
Ensembl ID:ENSGGOG00000024387
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1715
GCAGCGAACCAGAGGCGGACCGTGGTGCCCGGGATCTCACCGCCAGCGGCCTCCAAGCACGAAGGCGGCCCCGCGCGGTA
CCTGAAGCGGCCGACTGGCCTTCGGCGGGCCCGCGGCTCCCCCACCGCCGCCGCCATTGCGGCCAGCCCCCGGAACCCTC
TTCCCTGCGCACGCTGCACGCCGACCCCATACCCTCTGGGCTCCCACCAGGCCCATGCGGGGCGCCGCCGACCTGGTCCC
GAAGGCGCGTGCCTGGGGACAGGGACAACGGGCCAAGCAGTGGCCGGCGGCGGTGCCACACAAGGCAGAGCCAGGGTTGG
TCCCAGAGGGGGCCACCATAGCCTAAGCCGGTGAGCCGCTCAGGGAGAGAGGATATGCGGGCGGGGAGGGGGGCACAGAC
AGGCAAGGCCAGGGACCACAAGGGCAAGGGCACCCGGGAGCCCGCAGAGGGGCGGCTCAGGGAGAAACCTCAGGCAAGGC
CGTGCCACCAGGAAAACATGGCCACGGGATTCCACCGCCACAGATATGAGGGAGGTCCCGCGGCGCCCCACCTAGGAAGC
CGGACTGCCTCCGGCACTCACCAAGACCTGCCTCACGAGCCCGGGTCCCGCCATCGGGACCCTGAAGCGACCTCAGCCAC
AAACCCAACGCCAGGACCACGTTGCTGGTTTCTTGTCCATCCTCCGACACTGTCAAGCTCCGGGAGACCGGCGCGCCCGC
CACTTGGGATGCTTCCCATGGCCAGGCGGCCCAACCCCGTGCCACGCAAACGCGGTTGTCGGCACCGGTCGCTGCTCCTC
AGGGGAGCGGGTGGAGAGCCGGCTCGCAGCGGAGCGGGTCACGCATCGGACGGAAAGCCTGGCACAGCCACCGCTCACGC
AGCCTCCCAACTGCTAGGATGCTAGTCCGGCCCGGCGGGATCCTCCCCCAACTCAGAAGGGGGAGGCACGGGCCACACAG
TAGGCGACGAGCCGCCCTCGGTCCCCACCGCGGAGGACTCTCTCAAGAGAGAGTCAGTAAGAGACTCATCATTCTCTCCC
GAAAGCGGTGAGGTGGATGGCGGCTTGTGTTCCGAGCTCCTGTGGTTTCAGTTGGCCGCGCGTAGAGGAGAGATTTCCAA
TGTTTCCAGAGAGGCGTGAGCCACAGTCATT

ORF - retro_ggor_1715 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.08 %
Parental protein coverage: 84.57 %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalAARDRRPLAPGGRGAAPKFGQRTRGGPRCPGSHRQRPSSTK-AAPRLPHRRRRRGQPPEPSSPHSLQAKP
AA..RR...P...G..P.......GG...P.....RP.....A.PRLPHRRR..GQPPEPSS...L.A.P
RetrocopyAANQRRTVVP---GISPPAASKHEGG---PARYLKRPTGLR<AGPRLPHRRRHCGQPPEPSSLRTLHADP
ParentalKASGRPPGPRGAPPTWSRRRAPEDTDNGPTSGRRRRPTRRIRVWSRTGPPQPKPVSCSWREDPRAGWGAQ
..SG.PPGP.GAPPTWSRRR.P.D.DNGP.SGRRR..TR....WS..GPP.PKPVS.S.RED.RAG.GAQ
RetrocopyIPSGLPPGPCGAPPTWSRRRVPGDRDNGPSSGRRRCHTRQSQGWSQRGPP*PKPVSRSGREDMRAGRGAQ
ParentalTGKARDREGKGTREPTEGRLGEKPQARRGHQESTATESHR-RHEGGPVAPRLGRWTALRTHRDPPHEPGS
TGKARD..GKGTREP.EGRL.EKPQAR..HQE..AT..HR.R.EGGP.AP.LG..TA..TH.D.PHEPGS
RetrocopyTGKARDHKGKGTREPAEGRLREKPQARPCHQENMATGFHRHRYEGGPAAPHLGSRTASGTHQDLPHEPGS
ParentalRQRDHEVTSATNPTPGPCYSFLVHPPTRSSSGRPARPPLGTPPMARRPNPVPRKRGRRHWSLLLRGAGGE
R.RD.E.TSATNPTPGP...FLVHPPT.SSSGRPARPPLG..PMARRPNPVPRKRG.RH.SLLLRGAGGE
RetrocopyRHRDPEATSATNPTPGPRCWFLVHPPTLSSSGRPARPPLGMLPMARRPNPVPRKRGCRHRSLLLRGAGGE
ParentalLARSGAGHAPEGTPGTATARAASQPLGRRPGTEGSSPDSEGGGAGHTVGDERPSIPTAEDSIKRESVRDS
.ARSGAGHA..G.PGTATA.AASQ.LG...G..GSSP.SEGGG.GHTVGDE.PS.PTAEDS.KRESVRDS
RetrocopyPARSGAGHASDGKPGTATAHAASQLLGC*SGPAGSSPNSEGGGTGHTVGDEPPSVPTAEDSLKRESVRDS
ParentalAFSPESSEVDGGLCPELLWLQVTTLRGQISNVSREARAAVI
.FSPES.EVDGGLC.ELLW.Q....RG.ISNVSREA.A.VI
RetrocopySFSPESGEVDGGLCSELLWFQLAARRGEISNVSREA*ATVI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM 0 .00 RPM
SRP007412_heart 0 .00 RPM 0 .00 RPM
SRP007412_kidney 0 .00 RPM 0 .00 RPM
SRP007412_liver 0 .00 RPM 0 .00 RPM
SRP007412_testis 0 .00 RPM 0 .00 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1715 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1715 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Gorilla gorilla ENSGGOG00000024387 1 retrocopy
retro_ggor_1715 ,



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