RetrogeneDB ID: retro_ggor_1719

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 2b:30087969..30088443(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGGOG00000023424
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ENSG00000103472
• Ensembl ID: ENSGGOG00000023418
• Aliases: None
• Description: None

Sequence

>retro_ggor_1719
TCAGAAGCATTTTTGGAACGTCTCTGGGGAAAAAAAATGCAGGATCCAAATAATCCTGTCATCATCAGGTGAGCTGCTGG
AAATTATATTGGAAGCTCTTTGGCAAAAGCTAAATTCATTCCTCTCGTTACAACTATAAAATCATGCCTAGGTCTTTCGG
TTAACTGGCCACACAAATACCTTACTAACCAGGATCTGAGAACGAAGACTTTTTGTGATATTGCTCTCCATCAAACATTT
TACTCAGCCTTCCAAGCTGTGTTCCACCCCTTTGTTTTTAGACACAAGCAGCTTTTAAGCGTAAACCTGAAAGAAAGTTT
GAGATGTCTTCAGTGCCTACATTTTTAAGGGATAGTGACTAGGCAGCTAAATCCTCTGAATATTTGCCTGCCCTCAGTGG
TTAACTTATTTGCTGCTGTCACGAATAAATATCAGCTAGTCTGCTACACTATCAGTGAGAGGAACAACGGCCAG

Alignment

ORF - retro_ggor_1719 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.7 %
• Parental protein coverage: 55.09 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AEAFLEHLWKKL-QDPSNPAIIRQAAGNYTGSFLARAKFIPLIT-VKSCLDLLVNWLHIYLNNQDSGTKA
          .EAFLE.LW....QDP.NP.IIR.AAGNY.GS.LA.AKFIPL.T..KSCL.L.VNW.H.YL.NQD..TK.
Retrocopy SEAFLERLWXXXXQDPNNPVIIR*AAGNYIGSSLAKAKFIPLVTTIKSCLGLSVNWPHKYLTNQDLRTKT

Parental  FCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAI
          FCD.ALH..FYSA.QAVF..FVFRHKQLLS.NLKE.L..LQ.L.F..IV..QLNPL.ICLPSVVN.FAA.
Retrocopy FCDIALHQTFYSAFQAVFHPFVFRHKQLLSVNLKESLRCLQCLHF*GIVTRQLNPLNICLPSVVNLFAAV

Parental  TNKYQLVFCYTIIERNNRQ
          TNKYQLV.CYTI.ERNN.Q
Retrocopy TNKYQLV-CYTISERNNGQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	1.73 RPM
SRP007412_cerebellum	0.00 RPM	3.43 RPM
SRP007412_heart	0.00 RPM	0.53 RPM
SRP007412_kidney	0.00 RPM	3.52 RPM
SRP007412_liver	0.00 RPM	3.35 RPM
SRP007412_testis	0.10 RPM	7.15 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1719 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1719 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000023418	1 retrocopy	retro_ggor_1719 ,
Pongo abelii	ENSPPYG00000007263	1 retrocopy	retro_pabe_2051,