RetrogeneDB ID: | retro_ggor_1719 | ||
Retrocopy location | Organism: | Gorilla (Gorilla gorilla) | |
| Coordinates: | 2b:30087969..30088443(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSGGOG00000023424 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ENSG00000103472 | ||
| Ensembl ID: | ENSGGOG00000023418 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_ggor_1719
TCAGAAGCATTTTTGGAACGTCTCTGGGGAAAAAAAATGCAGGATCCAAATAATCCTGTCATCATCAGGTGAGCTGCTGG
AAATTATATTGGAAGCTCTTTGGCAAAAGCTAAATTCATTCCTCTCGTTACAACTATAAAATCATGCCTAGGTCTTTCGG
TTAACTGGCCACACAAATACCTTACTAACCAGGATCTGAGAACGAAGACTTTTTGTGATATTGCTCTCCATCAAACATTT
TACTCAGCCTTCCAAGCTGTGTTCCACCCCTTTGTTTTTAGACACAAGCAGCTTTTAAGCGTAAACCTGAAAGAAAGTTT
GAGATGTCTTCAGTGCCTACATTTTTAAGGGATAGTGACTAGGCAGCTAAATCCTCTGAATATTTGCCTGCCCTCAGTGG
TTAACTTATTTGCTGCTGTCACGAATAAATATCAGCTAGTCTGCTACACTATCAGTGAGAGGAACAACGGCCAG
ORF - retro_ggor_1719 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 71.7 % |
| Parental protein coverage: | 55.09 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | AEAFLEHLWKKL-QDPSNPAIIRQAAGNYTGSFLARAKFIPLIT-VKSCLDLLVNWLHIYLNNQDSGTKA |
| .EAFLE.LW....QDP.NP.IIR.AAGNY.GS.LA.AKFIPL.T..KSCL.L.VNW.H.YL.NQD..TK. | |
| Retrocopy | SEAFLERLWXXXXQDPNNPVIIR*AAGNYIGSSLAKAKFIPLVTTIKSCLGLSVNWPHKYLTNQDLRTKT |
| Parental | FCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAI |
| FCD.ALH..FYSA.QAVF..FVFRHKQLLS.NLKE.L..LQ.L.F..IV..QLNPL.ICLPSVVN.FAA. | |
| Retrocopy | FCDIALHQTFYSAFQAVFHPFVFRHKQLLSVNLKESLRCLQCLHF*GIVTRQLNPLNICLPSVVNLFAAV |
| Parental | TNKYQLVFCYTIIERNNRQ |
| TNKYQLV.CYTI.ERNN.Q | |
| Retrocopy | TNKYQLV-CYTISERNNGQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1 .73 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 3 .43 RPM |
| SRP007412_heart | 0 .00 RPM | 0 .53 RPM |
| SRP007412_kidney | 0 .00 RPM | 3 .52 RPM |
| SRP007412_liver | 0 .00 RPM | 3 .35 RPM |
| SRP007412_testis | 0 .10 RPM | 7 .15 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1719 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggor_1719 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Gorilla gorilla | ENSGGOG00000023418 | 1 retrocopy |
retro_ggor_1719 ,
|
| Pongo abelii | ENSPPYG00000007263 | 1 retrocopy |