RetrogeneDB ID: | retro_ggor_1818 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2b:121074074..121074497(-) | ||
Located in intron of: | ENSGGOG00000011710 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAMT | ||
Ensembl ID: | ENSGGOG00000002809 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.87 % |
Parental protein coverage: | 52.04 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | TPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLQDWAPRQTHKVVPLKGL |
TP......A...SKGG..LEVGFGMA....KVQE..I.EHWI.ECND..FQ.LQDW...Q.HKV.PLK.L | |
Retrocopy | TPTATPFTAFTTSKGG*LLEVGFGMATRIWKVQEVAIQEHWIMECNDSIFQLLQDWTQQQPHKVIPLKVL |
Parental | WEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV-LTYCNLTSWGELMKSKYSDI |
W..VA.TLP.G.FDGIL.D.YPL..ETWHT........H.......GGV.LTYC.LTS...LMKSKYSD. | |
Retrocopy | WKEVALTLPGGRFDGILHDAYPL*KETWHTLAQLHQEPHFSPAEAEGGVALTYCYLTSYRQLMKSKYSDV |
Parental | T |
T | |
Retrocopy | T |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .96 RPM | 19 .66 RPM |
SRP007412_cerebellum | 0 .67 RPM | 21 .24 RPM |
SRP007412_heart | 0 .00 RPM | 29 .27 RPM |
SRP007412_kidney | 0 .08 RPM | 49 .31 RPM |
SRP007412_liver | 0 .13 RPM | 135 .08 RPM |
SRP007412_testis | 0 .10 RPM | 20 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000130005 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000002809 | 2 retrocopies |
retro_ggor_1818 , retro_ggor_982,
|
Macropus eugenii | ENSMEUG00000005126 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000009315 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000011817 | 1 retrocopy |