RetrogeneDB ID: | retro_ggor_1960 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:99621712..99622133(-) | ||
Located in intron of: | ENSGGOG00000010890 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GMFG | ||
Ensembl ID: | ENSGGOG00000006957 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.53 % |
Parental protein coverage: | 99.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MSDSLVVC-EVDPELTEKLRKFRFRKETDNAAIIMKVD-KDRQMVVLEEEFQNISPEELKMELPERQPRF |
MS.SLVV...V...L.EKLRKFRF.KET.NA.I.MK.....R..V..E.E...ISP.ELK.ELPERQPRF | |
Retrocopy | MSESLVVL<DVAEDLVEKLRKFRFHKETNNASIVMKIE>DKRLVVLDE-ELEGISPDELKDELPERQPRF |
Parental | VVYSYKYVHD-DGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTDDLTEAWLQEK |
.VYSYKY.H..DGRV.YP.CFIFSSPVGCKPEQQM.YAGSKN.LVQTAELTKVFEIR.T..LTE.WL.EK | |
Retrocopy | IVYSYKYQHN>DGRVPYPPCFIFSSPVGCKPEQQMIYAGSKNKLVQTAELTKVFEIRNTEELTEEWLCEK |
Parental | LSFF |
L.FF | |
Retrocopy | LGFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 7 .62 RPM |
SRP007412_cerebellum | 0 .00 RPM | 2 .05 RPM |
SRP007412_heart | 0 .00 RPM | 4 .72 RPM |
SRP007412_kidney | 0 .00 RPM | 18 .52 RPM |
SRP007412_liver | 0 .05 RPM | 33 .16 RPM |
SRP007412_testis | 0 .00 RPM | 6 .01 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2818 |
Pongo abelii | retro_pabe_2209 |
Macaca mulatta | retro_mmul_1498 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000006529 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000008573 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006957 | 1 retrocopy |
retro_ggor_1960 ,
|
Mus musculus | ENSMUSG00000060791 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000015157 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000008772 | 1 retrocopy |