RetrogeneDB ID: retro_ggor_1987

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 3:156761126..156761540(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENSG00000189366
• Ensembl ID: ENSGGOG00000027087
• Aliases: None
• Description: None

Sequence

>retro_ggor_1987
CTGCTTCTAGGGTCGGTGGACCTGGGTGTCTGTCTGCACACGTCCTCCAGTGGCCTGGACCTGCCCATGAAGGTGGTGGA
CATGTTCGGGTGCTGTTTGCCTGTGTGTGCTGTGAACTTCAAGTGTTTACATGAGCTGGTGAAACATGAAGAAAACGGCT
TGGTCTTTGAGGACTCAGAGGAACTGGCAGCTCAGCTGCAGATGCTTTTCTCAAACTTTCCTGATCCTGAGGGCAAGGTA
AACCAGTTCCGGAAGAACCTGCGGGAGTCGCAGCAGCTCCGATGGGATGAGAGCTGGGTGCAGACTGTGCTTCCTTTGGT
TATGGACACGTAAATCCTGGGCCAGAGACTAAAACCCCAGGACCCCTGCTGTCCTTCCCGCAGCTTCTTCTCGGAGTCTC
AGGGCAAACCCTTT

Alignment

ORF - retro_ggor_1987 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.37 %
• Parental protein coverage: 73.26 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VITGSVDLGVCLHTSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGVVFEDSEELAAQLQMLF
          ...GSVDLGVCLHTSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENG.VFEDSEELAAQLQMLF
Retrocopy LLLGSVDLGVCLHTSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLF

Parental  SNFPDPAGKLNQFRKNLRESQQLRWD-SWVQTVLPLVMDT-LLGQRLKPRDPCCCPSRSFFSESQGKSF
          SNFPDP.GK.NQFRKNLRESQQLRWD.SWVQTVLPLVMDT..LGQRLKP.DP.CCPSRSFFSESQGK.F
Retrocopy SNFPDPEGKVNQFRKNLRESQQLRWDESWVQTVLPLVMDT*ILGQRLKPQDP-CCPSRSFFSESQGKPF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.34 RPM	2.54 RPM
SRP007412_cerebellum	0.12 RPM	1.62 RPM
SRP007412_heart	0.16 RPM	0.63 RPM
SRP007412_kidney	0.20 RPM	2.82 RPM
SRP007412_liver	0.53 RPM	2.40 RPM
SRP007412_testis	0.21 RPM	1.55 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1987 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1987 has 0 orthologous retrocopies within eutheria group .

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000027087	1 retrocopy	retro_ggor_1987 ,