RetrogeneDB ID: retro_ggor_204

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 19:9428291..9429311(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGGOG00000000497
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: ENSG00000179799
• Ensembl ID: ENSGGOG00000022378
• Aliases: None
• Description: None

Sequence

>retro_ggor_204
ACGTCCTATTTTCCAATTCTCTTTTTTTTTTTCCTCAAAAGGTGTCCGAGCTACACAGAGCCACAGAATCTCACAGGTGT
CTCAGAATTCCTCCTCCTGGGACTCTCAGAGGATCCAGAACTGCAGCCGGTCCTCGCTGGGCTGTTCCTGTCCATGTACC
TGGTCACGGTGCTGGGGAACCTGCTCATCATTCTGGCCGTCAGCTCTGCCTCCCACCTCCACAGTCCCATGTACTTCTTC
CTCTCCAACCTGTCCTTGGCTGACATCGGTTTCACCTCCACCACGGTCCCCAAGATGATTGTGGACATGCAAACTCACAG
CAGAGTCATCTCCTATGCAGGCTGCCTGACTCAGATGTCTTTTTTTGTCCTTTTTGCATGTATGGATGACATGCTCCTGA
GTGTGATGGCCTATGACCGGTTTGTGGCCATCTGTCACCCCCTGCACTACCGAGTCATCATGAACCCACGCCTCTGTGGC
TTCTTAATCTTGTTGTCTTTTTTTATTAGTCTTTTGGACTCCCAGCTGCACAATTTGATTGTGTTACAGCTCACCTGCTT
CAAGGATGTGGCCATTTCTAATTTCTTCTGTGACCCTTCTCAACTCCTCCACCTTAGGTGTTCTGACACCTTCATCAATG
AAATGGTCATATATTTTATGGGTGCCATATTTGGCTGTCTCCCTATCTCAGGGATCCTTTTCTCTTACTATAAAATTGTT
TCCTCCATTCTGAGAGTTCCAACATCAGATGGGAAGTATAAAGCCTTCTCCACCTGTGGCTCTCACCTGGCAGTTGTTTG
CTTATTTTATGGAACAGGCCTTGTAGGGTACCTCAGTTCAGCTGTGTCACCATCCCCCAGGAAGAGTATGGTGGCTTCAG
TGATGTACACTGTGGTCACCCCCATGCTGAACCCCTTCATCTACAGCCTGAGGAACAAGGACATTCAAAGTGCCCTGTGC
AGGCTGCATGGCAGAATCATCAAATCTCATCATCTCCATCCTTTTTGTTATATGGGATAG

Alignment

ORF - retro_ggor_204 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.58 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TDPQSLTNVSIFLLLELSEDPELQLVLAGLFLSMCLVTVLRNLLIILAVSPDSHLHTPMYFFLSNLSLTD
          T.PQ.LT.VS.FLLL.LSEDPELQ.VLAGLFLSM.LVTVL.NLLIILAVS..SHLH.PMYFFLSNLSL.D
Retrocopy TEPQNLTGVSEFLLLGLSEDPELQPVLAGLFLSMYLVTVLGNLLIILAVSSASHLHSPMYFFLSNLSLAD

Parental  IGFTSTTVPKMIVDIQSHSRVISYAGCLTQMSLFAIFGGMETLSQAIMAYDQFLAICHPLHYPVIVNPHL
          IGFTSTTVPKMIVD.Q.HSRVISYAGCLTQMS.F..F..M.......MAYD.F.AICHPLHY.VI.NP.L
Retrocopy IGFTSTTVPKMIVDMQTHSRVISYAGCLTQMSFFVLFACMDDMLLSVMAYDRFVAICHPLHYRVIMNPRL

Parental  CVFLVLVSFFLSLLDSQLHSWIVLQFTFFKNVEISNFVCEPSQLLNLACSDCVINSIFIYLDSTMFGFLP
          C.FL.L.SFF.SLLDSQLH..IVLQ.T.FK.V.ISNF.C.PSQLL.L.CSD..IN...IY.....FG.LP
Retrocopy CGFLILLSFFISLLDSQLHNLIVLQLTCFKDVAISNFFCDPSQLLHLRCSDTFINEMVIYFMGAIFGCLP

Parental  ISGILLSYYKIVPSILRMSPSDGKYKGFSTCGSHLAVVCLFYRTGIGMYLTSAVSPPPSNGVVASVMYAV
          ISGIL.SYYKIV.SILR...SDGKYK.FSTCGSHLAVVCLFY.TG...YL.SAVSP.P....VASVMY.V
Retrocopy ISGILFSYYKIVSSILRVPTSDGKYKAFSTCGSHLAVVCLFYGTGLVGYLSSAVSPSPRKSMVASVMYTV

Parental  VTPMLNPFIYSLRNRDIQSAPWRLRSTTVESHDLFHPF
          VTPMLNPFIYSLRN.DIQSA..RL......SH.L.HPF
Retrocopy VTPMLNPFIYSLRNKDIQSALCRLHGRIIKSHHL-HPF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.04 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.00 RPM	0.10 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_204 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_204 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000022378	1 retrocopy	retro_ggor_204 ,