RetrogeneDB ID:

retro_ggor_2105

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:4:107062543..107062875(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000026872
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:ENSG00000215831
Ensembl ID:ENSGGOG00000014398
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2105
GTCACAGTTGATGTCCATTTCTGTGGAGTTAACTTTGCTCATATTTTGGTCTGCCGTGGTGAATATTAGGAAAGGCCCCA
TCTTCCCTTCATACCTGGAATGGAGTTTTCTGGGACAGGATTGGAGACAGACACAGATGTCAGCACAGTTAAAGAGGGAG
ATAGAGTTATTGGCATAAGAAACTTTAAATGTATGGCTGAAGAATGTGTCACTGATCAGAAGAACCTGTGGCAGATTCCA
GAAAAGTTCTCCCTACAAGAAGCTGCTGTCCTCCATTTATCTTATGGCACTGCTATTTTTGCTCTTGAGCATCGGCCCAT
ACCCAACCTGGA

ORF - retro_ggor_2105 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.46 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalVRVDVHFCGVNFGDILICRDQYQERPHLPFIPGMEFSGTVLETGTDVRTVKEGDRVIGTRNFNCMAEECV
V.VDVHFCGVNF..IL.CR..Y.ERPHLPFIPGMEFSGT.LET.TDV.TVKEGDRVIG.RNF.CMAEECV
RetrocopyVTVDVHFCGVNFAHILVCRGEY*ERPHLPFIPGMEFSGTGLETDTDVSTVKEGDRVIGIRNFKCMAEECV
ParentalTDQKDLWQIPEKVSL-EAAVLPITYGTVIFALED-WARTQPG
TDQK.LWQIPEK.SL.EAAVL...YGT.IFALE...A.TQPG
RetrocopyTDQKNLWQIPEKFSLQEAAVLHLSYGTAIFALEH<SAHTQPG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 0 .86 RPM
SRP007412_cerebellum 0 .00 RPM 0 .55 RPM
SRP007412_heart 0 .00 RPM 0 .31 RPM
SRP007412_kidney 0 .00 RPM 4 .66 RPM
SRP007412_liver 0 .00 RPM 3 .77 RPM
SRP007412_testis 0 .10 RPM 0 .62 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2105 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2105 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Pongo abelii retro_pabe_2539

Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Gorilla gorilla ENSGGOG00000014398 1 retrocopy
retro_ggor_2105 ,
Pongo abelii ENSPPYG000000004751 retrocopy



Copyright © RetrogeneDB 2014-2017