RetrogeneDB ID: retro_ggor_2105

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 4:107062543..107062875(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGGOG00000026872
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ENSG00000215831
• Ensembl ID: ENSGGOG00000014398
• Aliases: None
• Description: None

Sequence

>retro_ggor_2105
GTCACAGTTGATGTCCATTTCTGTGGAGTTAACTTTGCTCATATTTTGGTCTGCCGTGGTGAATATTAGGAAAGGCCCCA
TCTTCCCTTCATACCTGGAATGGAGTTTTCTGGGACAGGATTGGAGACAGACACAGATGTCAGCACAGTTAAAGAGGGAG
ATAGAGTTATTGGCATAAGAAACTTTAAATGTATGGCTGAAGAATGTGTCACTGATCAGAAGAACCTGTGGCAGATTCCA
GAAAAGTTCTCCCTACAAGAAGCTGCTGTCCTCCATTTATCTTATGGCACTGCTATTTTTGCTCTTGAGCATCGGCCCAT
ACCCAACCTGGA

Alignment

ORF - retro_ggor_2105 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.46 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VRVDVHFCGVNFGDILICRDQYQERPHLPFIPGMEFSGTVLETGTDVRTVKEGDRVIGTRNFNCMAEECV
          V.VDVHFCGVNF..IL.CR..Y.ERPHLPFIPGMEFSGT.LET.TDV.TVKEGDRVIG.RNF.CMAEECV
Retrocopy VTVDVHFCGVNFAHILVCRGEY*ERPHLPFIPGMEFSGTGLETDTDVSTVKEGDRVIGIRNFKCMAEECV

Parental  TDQKDLWQIPEKVSL-EAAVLPITYGTVIFALED-WARTQPG
          TDQK.LWQIPEK.SL.EAAVL...YGT.IFALE...A.TQPG
Retrocopy TDQKNLWQIPEKFSLQEAAVLHLSYGTAIFALEH<SAHTQPG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.86 RPM
SRP007412_cerebellum	0.00 RPM	0.55 RPM
SRP007412_heart	0.00 RPM	0.31 RPM
SRP007412_kidney	0.00 RPM	4.66 RPM
SRP007412_liver	0.00 RPM	3.77 RPM
SRP007412_testis	0.10 RPM	0.62 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_2105 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_2105 has 1 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Pongo abelii	retro_pabe_2539

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000014398	1 retrocopy	retro_ggor_2105 ,
Pongo abelii	ENSPPYG00000000475	1 retrocopy	retro_pabe_2539,