RetrogeneDB ID: retro_ggor_2111

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 4:117808620..117809689(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EXOC7
• Ensembl ID: ENSGGOG00000008820
• Aliases: None
• Description: None

Sequence

>retro_ggor_2111
GAGATGGTGGACATGGAGACTGATGCTACATTCACTGTGTCATTACCTTTGTCAAGCTGACCTAGAGCGAGTATCAGTTG
CTGGCTGACATCATTGCTGAGCACCATCAGGAGAAGACCTTTTACTCTGATACAGGATGTGCTGGATGGGCTGATACTTG
AAGGGGAGAGTATTGTCTCCCGCTCAGAGGCCATCATTTGACACAACTTTTCCATGGTGCTTACTGTCTTCTCCATCCCG
CAGGGCCTAAGCACAGCAAGCCTGAGTTTGACCAGGTGCTCTAGGGCATGGCCGCCATCAGCAAGAACAAATCACCTGGC
CTCATCATCTCCCTAGAGGCCACTGGAGCCAAAGCACTGGAGGACTTTGTGGATAACATCAAAAATGACCTCGACAATGA
ATGCAACATGCCCAAGAATGGCACCATGCTCACAAGAAACGTCATCCTCTTCCTGCAGCAGCTTCTGGACTTCCAGGAGA
TGGTGGGTAACATGCTGGCTTCCCAAGAAGCCTGTTCTTCAGCCACAGCCATGGTTCCAAGTTCAACAAGTGACTGCTAA
GCATCTATATCTGTAAAATTCTGGGCAGCCTGCAGTTGAACTTGCTGAGCAAGTCCAAGGTGTATGAGGACCCAACTCTG
AGCACCATCTTCCTGCATAGCAACTACAACTACATCCTCAAGTTCCTGAAGTCTGAGCTAATCCAGCTGGTGGCTGTGAC
TCAGCAGACTGCTGAGCACCCCCACTGGGAGCATATTGAGCAGTAGATCCCGGCTTACCAGTGCAGTTGGCTAAAGGTGA
CTGAATATTTCACAGAGAACAATATACTTGTGTTCCAACCAGGAGTCAAACTCTAGAATAAGGAGCAGCAGATGATCAAG
GAGTGTTTCAAGGGCTTCAATGATGGCCTTGAAGAACTGTGCAAGATCCAAAAGGCCTGGGCTATTTCAGACACAGAGAA
GAAGGACAGTATTTGCCAGGCCCAAAAAAACATTGTCAAGGAAACCTATGGGGCCTCTCGGCACAAGTTCAGCAGCATGC
CCTTCACCAAGAGCCTGGAGAAGTACATA

Alignment

ORF - retro_ggor_2111 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.58 %
• Parental protein coverage: 52.77 %
• Number of stop codons detected: 6
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  DMLDVETDA-YIHCVSAFVKLAQSEYQLLADIIPEHHQ-KKTFDSLIQDALDGLMLEGENIVSAARKAIV
          .M.D.ETDA.YIHCV..FVKL..SEYQLLADII.EHHQ....F..LIQD.LDGL.LEGE.IVS....AI.
Retrocopy EMVDMETDA<YIHCVITFVKLT*SEYQLLADIIAEHHQ>RRPF-TLIQDVLDGLILEGESIVSRS-EAII

Parental  RHDFSTVLTVFPILRHL-KQTKPEFDQVLQGTAASTKNKLPGLITSMETIGAKALEDFADNIKNDPDKEY
          .H.FS.VLTVF.I...L.K..KPEFDQVL.G.AA..KNK.PGLI.S.E..GAKALEDF.DNIKND.D.E.
Retrocopy *HNFSMVLTVFSIPQGL<KHSKPEFDQVL*GMAAISKNKSPGLIISLEATGAKALEDFVDNIKNDLDNEC

Parental  NMPKDGTVHELTSNAILFLQQLLDFQETAGAMLASQETSSSAT-SYSSEFSKRLLSTYICKVLGNLQLNL
          NMPK.GT...LT.N.ILFLQQLLDFQE..G.MLASQE..SSAT.S..S.F.K.LLS.YICK.LG.LQLNL
Retrocopy NMPKNGTM--LTRNVILFLQQLLDFQEMVGNMLASQEACSSAT<SHGSKFNK*LLSIYICKILGSLQLNL

Parental  LSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVAVTQKTAERSYREHIEQQIQTYQRSWLKVTDYI
          LSKSKVYEDP.LS.IFLH.NYNYILK.L.KSELIQLVAVTQ.TAE....EHIEQ.I..YQ.SWLKVT.Y.
Retrocopy LSKSKVYEDPTLSTIFLHSNYNYILKFL-KSELIQLVAVTQQTAEHPHWEHIEQ*IPAYQCSWLKVTEYF

Parental  AEKNLPVFQPGVKLRDKERQIIKERFKGFNDGLEELCKIQKAWAIPDTEQRDRIRQAQKTIVKETYGAFL
          .E.N..VFQPGVKL..KE.Q.IKE.FKGFNDGLEELCKIQKAWAI.DTE..D.I.QAQK.IVKETYGA..
Retrocopy TENNILVFQPGVKL*NKEQQMIKECFKGFNDGLEELCKIQKAWAISDTEKKDSICQAQKNIVKETYGASR

Parental  QKFGSVPFTKNPEKYI
          .KF.S.PFTK..EKYI
Retrocopy HKFSSMPFTKSLEKYI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	121.08 RPM
SRP007412_cerebellum	0.04 RPM	87.70 RPM
SRP007412_heart	0.00 RPM	28.74 RPM
SRP007412_kidney	0.00 RPM	86.77 RPM
SRP007412_liver	0.00 RPM	39.12 RPM
SRP007412_testis	0.00 RPM	88.89 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_2111 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_2111 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000008820	1 retrocopy	retro_ggor_2111 ,