RetrogeneDB ID: retro_ggor_2145

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 4:195605891..195606230(-)
• Located in intron of: ENSGGOG00000009966

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PRG3
• Ensembl ID: ENSGGOG00000004044
• Aliases: None
• Description: None

Sequence

>retro_ggor_2145
CTCCCAGTTAGTACGGACCCCTGTGACATTCACAGAAGTTCAGAATGTCTGAGATGCTCTGGAGGCTACCTTATCTCCGT
CTGCAGCTACAACTCCAATGATCACAATCAGTGCTACGCTGGCACAGCCAGCCTGGCCCTGCTCTGGATTGGAGGCATCC
TCAAGGGCTGCTTGCTGTGGAAGCAGTTTCGCTGGACCGAGGGGAGCCACTGTAATTTTGGATACTGGGCCTTAGGGTCA
CCCGGGAATGGGAATGGCTGCTGTGTGGCCCTGTTTGCCAGAGGGGGCCATTGGTGATGAGCCCCATGCAAGTGGCATCT
GCCCTTCACCTGCTCCTTC

Alignment

ORF - retro_ggor_2145 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.44 %
• Parental protein coverage: 50.22 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LLVRTPKTFANAQNVCSRCYGGNLVSIHDFNFNYRIQCCTSTVNQAQVWIGGNLRGWFLWKQFCWTDGSH
          L.V.T..........C.RC.GG.L.S....N.N...QC...T...A..WIGG.L.G..LWKQF.WT.GSH
Retrocopy LPVSTDPCDIHRSSECLRCSGGYLISVCSYNSNDHNQCYAGTASLALLWIGGILKGCLLWKQFRWTEGSH

Parental  WNFAYWSPGQPGNGQGSCVALCTKGGYWRRAQCDKQLPFVCSF
          .NF.YW..G.PGNG.G.CVAL...GG.W..A.C...LPF.CSF
Retrocopy CNFGYWALGSPGNGNGCCVALFARGGHW**APCKWHLPFTCSF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.06 RPM	0.00 RPM
SRP007412_kidney	0.25 RPM	0.00 RPM
SRP007412_liver	0.45 RPM	0.00 RPM
SRP007412_testis	0.00 RPM	0.00 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_2145 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_2145 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000004044	1 retrocopy	retro_ggor_2145 ,