RetrogeneDB ID: retro_ggor_2191

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 5:84815114..84815435(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENSG00000232471
• Ensembl ID: ENSGGOG00000027866
• Aliases: None
• Description: None

Sequence

>retro_ggor_2191
GAGAGACTAGCAGAGGTCAGTACCAAACTTCTTGTGGAGAAACAGCAGACCAGATCTTTATTTACTAATCATACTACAAG
GCCAGTCCTAGACTCACCTTGTGTTGGAAATCTTAATAATAGTTTAGGGCTCTACAGAAAACATATTCCAAGAGAAAACT
TAATGATCCCTACCTCAGGCCCACAGACTTCAAATAACAGAATAAAGAACTACTTGTTGAAGATACAGCAAGAGTTGCAA
GAAAGCACAACTAGAGAACTAAAAAAAGATGTTGCTGAATTTGAATCTGGATCTTATGTAGCTTCTCCTCTAGGGTCTAC
T

Alignment

ORF - retro_ggor_2191 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.03 %
• Parental protein coverage: 69.74 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KRLAEVNTKLLVEKQQSRSLFTTLTTRPVMEPPCVGNLNNSLDLNRKLIPRENLVISTSNPRASNNSMEN
          .RLAEV.TKLLVEKQQ.RSLFT..TTRPV...PCVGNLNNSL.L.RK.IPRENL.I.TS.P..SNN...N
Retrocopy ERLAEVSTKLLVEKQQTRSLFTNHTTRPVLDSPCVGNLNNSLGLYRKHIPRENLMIPTSGPQTSNNRIKN

Parental  YLSKMQQELEKNITRELKEAAAELESGS-IASPLGST
          YL.K.QQEL....TRELK...AE.ESGS..ASPLGST
Retrocopy YLLKIQQELQESTTRELKKDVAEFESGSYVASPLGST

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	3.79 RPM
SRP007412_cerebellum	0.00 RPM	3.59 RPM
SRP007412_heart	0.00 RPM	0.66 RPM
SRP007412_kidney	0.00 RPM	3.31 RPM
SRP007412_liver	0.00 RPM	2.88 RPM
SRP007412_testis	0.00 RPM	4.56 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_2191 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_2191 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000010374	1 retrocopy	retro_cjac_2577,
Gorilla gorilla	ENSGGOG00000027866	1 retrocopy	retro_ggor_2191 ,