RetrogeneDB ID:

retro_ggor_2351

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:6:70950500..70951131(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000022678
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:CCDC112
Ensembl ID:ENSGGOG00000001120
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2351
AGTCATCTCTACAACAACAACAACAAAACTTCAGAATTTGGCAGTATGCTGAAAGAATTGGAAAATAAACTGATTATCAG
CAGGAAAATAGAGCAAAAACCCAATAACAGTTGTTCAAAATATATAACAATGTAAAGTGACTTTAGCATCAGTTGTAAAG
TGTGACACCTACACCTGATTTTATTGCAAAGCTCAGAGAAATGAACGTAAGCAATTAAAAGTACAGTAAACATTTTTAAG
AAAGAACAGAGGTTGATTACATGAAAAGCTTAATAAAGACAAGAAAATAGCCAAAAATTAGTTGAATACTGTATCAAGGA
AAATTGACATATGGGCTTTTGGTCACTAGAAACATGGAGAACTTTCAGAAGAATGTTAAGCAAAGTTCCTGTAGACAGAA
TACAACAAAGTAGTCTTCCAGGAGAAATGGTAGATTTTGCAAAATTCCTTCAGTAAACAGTAGGATGTCAAGGGTGCTGG
ATGATTGTGATCACCAGAACTTTGTAAAAATGAGAAACAAGCATAAAAAGAAGACAAGATATATAGGGGAAGTTTTGCAA
CACCATCCTGGAAGAGCACAGGATAAAGTGCAACAGTATGAAAGATACATTAAAAATTTCTGACTCTAGAA

ORF - retro_ggor_2351 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 56.22 %
Parental protein coverage: 69.08 %
Number of stop codons detected: 6
Number of frameshifts detected 6


Retrocopy - Parental Gene Alignment:

ParentalSHFYNQKSDFRIEHSMLEELENKLI-HSRE-RAKIQQQLAKIHNNVKKLQHQLKDVKPTPDFVEKLREMM
SH.YN.........SML.ELENKLI....E.RAK.Q.QL.KI.NNVK.L.HQL..V.PTPDF..KLREM.
RetrocopySHLYNNNNKTSEFGSMLKELENKLI<YQQENRAKTQ*QLFKIYNNVK*L*HQL*SVTPTPDFIAKLREMN
ParentalEE-IENAINTFKEEQRLI-YEELIKEEKTTNNELSAISRKIDTWALGN-SETEKAFRAISSKVPVDKVTP
...I....N.FK.EQRLI..E.L.K..K...N.L...SRKID.WA.G...ET...FR...SKVPVD....
RetrocopyVS>IKSTVNIFKKEQRLI>HEKLNKDKKIAKN*LNTVSRKIDIWAFGH<LETWRTFRRMLSKVPVDRIQQ
ParentalSTLPEEVLDFEKFLQQTGGRQGAW-DDYDHQNFVKVRNKHKGKPPFMEEVLEHLPGKTQDEVQQHEKWYQ
S.LP.E..DF.KFLQ.T.G.QG.W.DD.DHQNFVK.RNKHK.K.....EVL.H.PG..QD.VQQ.E....
RetrocopySSLPGEMVDFAKFLQ*TVGCQGCW<DDCDHQNFVKMRNKHKKKTRYIGEVLQHHPGRAQDKVQQYERYIK
Parental-KFLALE
.KFL.LE
Retrocopy<KFLTLE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 2 .01 RPM
SRP007412_cerebellum 0 .00 RPM 1 .62 RPM
SRP007412_heart 0 .00 RPM 0 .09 RPM
SRP007412_kidney 0 .12 RPM 1 .02 RPM
SRP007412_liver 0 .00 RPM 0 .63 RPM
SRP007412_testis 0 .00 RPM 12 .54 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2351 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2351 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Gorilla gorilla ENSGGOG00000001120 1 retrocopy
retro_ggor_2351 ,



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