RetrogeneDB ID: retro_ggor_2516

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 7:46841380..46841915(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSGGOG00000027998
• Aliases: None
• Description: None

Sequence

>retro_ggor_2516
ATGTGCTTAAATCTTTTGGCCCAGCTCCTACGTCCCGGCAGCCTCTCCAGGCCCAGAACTTTCTCCAGTCAGCCTCTACA
GACCAAGTTCATGACTCACAATGGCCTATTTAGGCCTATACCCTTCCTCACGGCAGTCTCCGCAGATGAGCCTACTGCCT
CACAACAGCCTCCACAGGCACAGCTCCACCGTTACAATGGCCTCTTTAGACCCAGCTCCTGCCTCCCAGCCTTCTCTCCA
GGCCCCGAACTTTCTCAAGTCGACCTCACCAGGCCCAGCTCATGCTTCTTGGCAGCCTCTCCAGGCCCAGCTCCTGCATC
TTGGCAGCCTCTCCAGGCCCAGCCTCTGCCTCCCATCAGCCTCTACAGTCCCAACATCTGCCTCACAGCAGATTCTTCAG
GCCCAGCATCTGCCTCACTGTGGACCACCCAAGCCAAGCTCCCAACCTTTCAGCAGCTTCTACACACCCAGCTCCTGCCA
CCCAGTGGCCTCTTTAGGCCAAGCTCATGCCTCACAAGGGCCTTTCCAGGCCCAA

Alignment

ORF - retro_ggor_2516 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.89 %
• Parental protein coverage: 67.68 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MCLNLLAQLLPPGSLSRPRTFSSQPLQTKLMTHNGLFRPIPYLMAVSADEPTASQQPPQAQLHRYNGLFR
          MCLNLLAQLL.PGSLSRPRTFSSQPLQTK.MTHNGLFRPIP.L.AVSADEPTASQQPPQAQLHRYNGLFR
Retrocopy MCLNLLAQLLRPGSLSRPRTFSSQPLQTKFMTHNGLFRPIPFLTAVSADEPTASQQPPQAQLHRYNGLFR

Parental  PSSYLPAFSPGPELSQVDLTRPSSCFFAASPGPAPASW-PLQAQPLPPVSLYSPNICLTADSSGPASASL
          PSS.LPAFSPGPELSQVDLTRPSSCF.AASPGPAPASW.PLQAQPLPP.SLYSPNICLTADSSGPASASL
Retrocopy PSSCLPAFSPGPELSQVDLTRPSSCFLAASPGPAPASWQPLQAQPLPPISLYSPNICLTADSSGPASASL

Parental  WTLQAHL-LPHGGLPGPSPCLPAASPGPPPPASQWPLSAQ
          WT.QA.L..P......PS.C.P.AS.G....ASQ.P..AQ
Retrocopy WTTQAKL>QPFSSFYTPSSCHPVASLG-QAHASQGPFQAQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.14 RPM	0.34 RPM
SRP007412_cerebellum	0.35 RPM	0.32 RPM
SRP007412_heart	0.09 RPM	0.06 RPM
SRP007412_kidney	0.45 RPM	0.16 RPM
SRP007412_liver	0.29 RPM	0.26 RPM
SRP007412_testis	1.86 RPM	2.59 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_2516 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_2516 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000027998	1 retrocopy	retro_ggor_2516 ,