RetrogeneDB ID: retro_ggor_2558

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 7:147484349..147484573(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: COX6B2
• Ensembl ID: ENSGGOG00000001358
• Aliases: None
• Description: None

Sequence

>retro_ggor_2558
TACAAGACTGCCCCTTTTGACAGCTGCTTCCCAACCAGAACCAGACCAGGAACTGCTAGCAGAACTACCTGGACTTCCAC
TGCTGTCAGAAGGCAGTGACCACTAAAGGAGGTGATATCTCTGTGTGCGAATGGTACCAGCATGTGTACAAGTCCCTCTG
CCCCACATCCTGGGTCACAGCCTGGGACAAGCGCTGGGCTGAAGGCACATTTCCCGGGAAGATC

Alignment

ORF - retro_ggor_2558 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.95 %
• Parental protein coverage: 85.23 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  WSTPPFDPRF-PNQNQIRNCYQNFLDYHLCLKTRTRRGKSTQPCEYYFRVYHSLCPISWVESWNEQIKNG
          ..T.PFD..F.PNQNQ.RNC.QN.LD.H.C.K..T..G.....CE.Y..VY.SLCP.SWV..W......G
Retrocopy YKTAPFDSCF<PNQNQTRNC*QNYLDFHCCQKAVTTKGGDISVCEWYQHVYKSLCPTSWVTAWDKRWAEG

Parental  TFAGKI
          TF.GKI
Retrocopy TFPGKI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	2.49 RPM	0.05 RPM
SRP007412_cerebellum	1.46 RPM	0.12 RPM
SRP007412_heart	5.03 RPM	0.00 RPM
SRP007412_kidney	8.95 RPM	0.00 RPM
SRP007412_liver	4.17 RPM	0.03 RPM
SRP007412_testis	1.45 RPM	16.27 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_2558 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_2558 has 1 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Homo sapiens	retro_hsap_3807

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000001358	1 retrocopy	retro_ggor_2558 ,