RetrogeneDB ID: | retro_ggor_2663 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 8:63563885..63564378(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000027263 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSGGOG00000027442 | ||
Aliases: | None | ||
Description: | Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:G3S3X1] |
Percent Identity: | 71.26 % |
Parental protein coverage: | 99.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MVNPTVSFNIAVNGEPSGCVSFKLFADKFPKTAENFRALSTGEKGFDYKCSSFHRIIPGFMCQGGDFTRH |
MVNPT..F.IA.NGEP.G..S..LFAD.F.K.A.NF.ALST.EK...YK.S.FH.IIPG.MCQG.DFT.H | |
Retrocopy | MVNPTMFFHIAINGEPLGHASLELFADMFSKSAKNFHALSTREKECGYKVSCFHKIIPGCMCQGVDFTCH |
Parental | NGTGGKSIYGEKFDDENFILKHTGPGIL-SMANAGPNTNDSLFFF-ICTAKTEWLDGKHMVFGKVKDGMN |
NGT.GKS.Y.EKFDD.NF.LKHT.PGIL..MA.AGPNTN.S.FF...CTA.TEWLDGKH.VFGKVK..M. | |
Retrocopy | NGTDGKSVYREKFDDDNFNLKHTHPGIL<AMAIAGPNTNHSQFFI<LCTANTEWLDGKHVVFGKVKESMS |
Parental | IVEAMEHFGSGNGKTIKKITIADCTQL |
IVEAME.FGS.NGKT.KKITIAD..QL | |
Retrocopy | IVEAMERFGSRNGKTNKKITIADYEQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3966 |
Pan troglodytes | retro_ptro_2692 |
Callithrix jacchus | retro_cjac_1451 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Gorilla gorilla | ENSGGOG00000026298 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000027442 | 1 retrocopy |
retro_ggor_2663 ,
|
Macropus eugenii | ENSMEUG00000002016 | 20 retrocopies |
retro_meug_1024, retro_meug_1055, retro_meug_1089, retro_meug_1133, retro_meug_1269, retro_meug_1391, retro_meug_1576, retro_meug_1746, retro_meug_1880, retro_meug_1975, retro_meug_2013, retro_meug_2037, retro_meug_260, retro_meug_297, retro_meug_301, retro_meug_437, retro_meug_478, retro_meug_510, retro_meug_713, retro_meug_73,
|
Monodelphis domestica | ENSMODG00000016089 | 9 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017062 | 3 retrocopies |