RetrogeneDB ID: retro_ggor_2793

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 9:39298628..39299480(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSGGOG00000016455
• Aliases: None
• Description: None

Sequence

>retro_ggor_2793
ATGGAGGAAGAGTTACGGGACTACCAGAGAGCTCAGGATGAAGCACTCACAAAAAGGCAGCTTCTGGAGCAGACGCTGAA
GGACCTGGAGTATGAGCTGGAAGCCAAGAGTCACCTCAAAGATGACTGCAGCAGACTGGTCAAGCAGATGGAGGACAAGG
TGTCTCAACTGGAGATGGAACTGGAAGAAGAGAGAAACAACTCAGATTTGCTGTCTGAGAGGATCAGTAGGAGCAGGGAA
CAGATGGAGCAGGTGAGGAATGAGCTACTTCAGGAGAGAGCTGCGAGACAAGACTTGGAGTGCGACAAGATTTCCCTGGA
GAGGCAGAACAAGGACTTAAAGAGCCGGATTATCCACCTGGAAGGTTCCTACAGGTCCAGCAAAGAGGGGCTGGTTGTGC
AGATGGAGGCCAGGATCGCGGAGCTGGAGGACCGCCTGGAAAGTGAGGAGCGGGATCGGGCCAATCTTCAGCTCAGCAAC
CGGCGGCTGGAGCGGAAAGTGAAGGAGCTGGTGATGCAGGTGGATGATGAGCACCTGTCATTGACTGATCAGAAGGACCA
GCTGAGCTTGCGTTTGAAAGCCATGAAGTGGCAGGTGGAGGAGGCTGAGGAGGAAATCGACAGACTGGAAAGTTCTAAAA
AGAAGCTGCAGAGGGAGCTGGAGGAGCAGATGGACATGAATGAACATCTGCAGGGGTAGCTCAACTCCATGAAGAAGGAC
TTAAGACTGAAGAAGCTGCCGAGTAAAGTGCTGGATGACATGGATGACGACGATGACCTCAGCACGGATGGGGGAAGCCT
CTATGAGGCGCCTGTGAGCTACACATTCTCCAAGGACAGCACCGTCGCCAGC

Alignment

ORF - retro_ggor_2793 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.6 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDL
          MEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDD.SRLVKQMEDKVSQLEMELEEERNNSDL
Retrocopy MEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDCSRLVKQMEDKVSQLEMELEEERNNSDL

Parental  LSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIA
          LSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIA
Retrocopy LSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIA

Parental  ELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLE
          ELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMK.QVEEAEEEIDRLE
Retrocopy ELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKWQVEEAEEEIDRLE

Parental  SSKKKLQRELEEQMDMNEHLQGQLNSMKKDLSRLKKLPSKVLDDMDDDDDLSTDGGSLYEAPVSYTFSKD
          SSKKKLQRELEEQMDMNEHLQG.LNSMKKDL.RLKKLPSKVLDDMDDDDDLSTDGGSLYEAPVSYTFSKD
Retrocopy SSKKKLQRELEEQMDMNEHLQG*LNSMKKDL-RLKKLPSKVLDDMDDDDDLSTDGGSLYEAPVSYTFSKD

Parental  STVAS
          STVAS
Retrocopy STVAS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.86 RPM	7.58 RPM
SRP007412_cerebellum	0.32 RPM	2.92 RPM
SRP007412_heart	0.34 RPM	5.22 RPM
SRP007412_kidney	5.48 RPM	89.42 RPM
SRP007412_liver	1.32 RPM	10.74 RPM
SRP007412_testis	0.41 RPM	5.59 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_2793 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_2793 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000016455	1 retrocopy	retro_ggor_2793 ,