RetrogeneDB ID: | retro_ggor_2914 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | X:60014316..60014711(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSGGOG00000011507 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.98 % |
Parental protein coverage: | 73.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVK-NRSVYIKGFPTDATLD |
RLNRLTTDFNVIVEALSKSK.ELMEISEDKTKIRRSPSK.LPEVTDEYKND.K.NRSVYIK.FPTDATL. | |
Retrocopy | RLNRLTTDFNVIVEALSKSKSELMEISEDKTKIRRSPSKALPEVTDEYKNDEK<NRSVYIKDFPTDATLE |
Parental | DIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFNENF |
DIKEWLEDKG.VL.IQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF.... | |
Retrocopy | DIKEWLEDKGKVLYIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 5 .47 RPM |
SRP007412_cerebellum | 0 .24 RPM | 3 .39 RPM |
SRP007412_heart | 0 .06 RPM | 0 .91 RPM |
SRP007412_kidney | 0 .98 RPM | 6 .62 RPM |
SRP007412_liver | 0 .42 RPM | 3 .22 RPM |
SRP007412_testis | 0 .52 RPM | 6 .53 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007763 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013450 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004614 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011507 | 3 retrocopies |
retro_ggor_2914 , retro_ggor_434, retro_ggor_791,
|
Gorilla gorilla | ENSGGOG00000023471 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000000867 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000001650 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016316 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008227 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000029768 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000007998 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009056 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000002152 | 2 retrocopies |