>retro_ggor_598
GGATTCACTGAAGCACTCACCTTTGCTCTCTGCTCCAAGAGGATATTTCTGATAAACTTGTTTTGGATTATGTCTGCAAC
AAAAGCAGTCCACATAAGTAAAACTAAAACAGTTCAATTACAGGTGGCATTCATTACCCTTCTTCTTGGTGCTCTGAAGA
CCATAGAAACAAATCAGAAGATGCTCCTTCCTCTGAAACTATTTGAAATCTCTAACATTGTAATAAAAGATTCTAGCAGA
GATGTAGGTACAAAAAACTATGGCCATCTCTTTGCTGTTCATTACAACAAGAATCCTGGGTTTAAGGTCATCCATATGCA
TCTGGACAGAATTACACAGCTGCGCAATGTACCTCCTGTTGAAAATAAAGGGGGATATGTGATCAAATCATCAAAAGAAA
CCGCTTTCTTCCCTGGGCAATGCACAGAGATCTTTGCCAGGAGTCAAAATGTCAGGAAGCTTGGAGTTCTTCATCCTGAT
GTTATCACCAAATTTGAGCTGACCATTCCCTGTTCCTCCCTGGAAGTCAATATTGAGCCCTTTTTG
ORF - retro_ggor_598 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
73.91 % |
Parental protein coverage: |
59.09 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | GFTEALTFALCS-QEDIADKLGVD-ISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLF |
| GFTEALTFALCS.QEDI.DKL..D..SATKAVHIS..KT...QVA..TLL.G.LKTI..N.KM.LPLKLF |
Retrocopy | GFTEALTFALCS<QEDISDKLVLD>MSATKAVHISKTKTVQLQVAFITLLLGALKTIETNQKMLLPLKLF |
|
Parental | EISDIVIKDPNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFP |
| EIS.IVIKD...DVG.KNY.HL.AV.YNKNPGF..IH..LDRI.QL..VPP.E.KGGYVIK.S...AFFP |
Retrocopy | EISNIVIKDSSRDVGTKNYGHLFAVHYNKNPGFKVIHMHLDRITQLRNVPPVENKGGYVIKSSKETAFFP |
|
Parental | GRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINIGPFL |
| G.C.EIFAR.Q.V.KLGVLHPDVITKFELT.PCSSLE.NI.PFL |
Retrocopy | GQCTEIFARSQNVRKLGVLHPDVITKFELTIPCSSLEVNIEPFL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
22 .20 RPM |
SRP007412_cerebellum |
0 .00 RPM |
13 .83 RPM |
SRP007412_heart |
0 .03 RPM |
7 .29 RPM |
SRP007412_kidney |
0 .04 RPM |
18 .85 RPM |
SRP007412_liver |
0 .00 RPM |
16 .04 RPM |
SRP007412_testis |
0 .00 RPM |
37 .40 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_598 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggor_598 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.