RetrogeneDB ID: | retro_ggor_623 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
| Coordinates: | 11:434384..434647(+) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | ENSG00000203520 | ||
| Ensembl ID: | ENSGGOG00000022192 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_ggor_623
GTGCAATGGCACAATCTTGGCTCACTGCAACTTCCCCCTCCTGGATTCAAGCGATTCTCCTGCTTCAGGCCCTCAAGTAG
CTGGGATTACAGGTGCGTGCCACCACGCCCGGCTAATTTCATATTTTTAGTAGAGTTGGGATTTCACCATGTTAGTCAGG
CTGGTCACAAACTCCTGACCTCAAGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCTATGAC
ATCTGATCCCTAATTTTTATTTT
GTGCAATGGCACAATCTTGGCTCACTGCAACTTCCCCCTCCTGGATTCAAGCGATTCTCCTGCTTCAGGCCCTCAAGTAG
CTGGGATTACAGGTGCGTGCCACCACGCCCGGCTAATTTCATATTTTTAGTAGAGTTGGGATTTCACCATGTTAGTCAGG
CTGGTCACAAACTCCTGACCTCAAGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCTATGAC
ATCTGATCCCTAATTTTTATTTT
ORF - retro_ggor_623 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 65.17 % |
| Parental protein coverage: | 84.62 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | VQWCDLGSLQPLLPGFKQFSCFSLLSSWDYRCPPPSAANFC-IFSRDWVSPCWSGWSQTPDLRRSARLSL |
| VQW..LGSLQ...PGFK.FSCF...SSWDYRC.PP..ANF..IFSR...SPC.SGWSQTPDL..S.RL.L | |
| Retrocopy | VQWHNLGSLQLPPPGFKRFSCFRPSSSWDYRCVPPRPANFI<IFSRVGISPC*SGWSQTPDLK*STRLGL |
| Parental | PKCWDYRREPPHPAITYLF |
| PKCWDYR.E..H......F | |
| Retrocopy | PKCWDYRCEL*HLIPNFYF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .05 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 0 .08 RPM |
| SRP007412_heart | 0 .00 RPM | 0 .09 RPM |
| SRP007412_kidney | 0 .00 RPM | 0 .04 RPM |
| SRP007412_liver | 0 .00 RPM | 0 .03 RPM |
| SRP007412_testis | 0 .00 RPM | 0 .10 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_623 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggor_623 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Gorilla gorilla | ENSGGOG00000022192 | 1 retrocopy |
retro_ggor_623 ,
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