RetrogeneDB ID: | retro_ggor_812 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
| Coordinates: | 12:74552871..74553120(+) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | ENSG00000244187 | ||
| Ensembl ID: | ENSGGOG00000014707 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_ggor_812
CGGCACCAGCATGGCCTTTGGCTTGCAGATGTTCATTCAGAGGAAGTTTCCATACCTTTTGCAGTGGAGCCTACTAGTGG
CTGTGGTCTCAGGCTCCATGGCCAGCTACAGGGTAACAATAGTGGAGTCAGAGAAATGCAACAACCTCTGGCTCTTCCTG
GAGACCAGGCAGCTCCCCAAAGACATGAGCACAGATCAGCGAAGCTAGGAGAGTTCTATCCAGGGCACAGAGGATTGGGG
GCAGGAGGA
CGGCACCAGCATGGCCTTTGGCTTGCAGATGTTCATTCAGAGGAAGTTTCCATACCTTTTGCAGTGGAGCCTACTAGTGG
CTGTGGTCTCAGGCTCCATGGCCAGCTACAGGGTAACAATAGTGGAGTCAGAGAAATGCAACAACCTCTGGCTCTTCCTG
GAGACCAGGCAGCTCCCCAAAGACATGAGCACAGATCAGCGAAGCTAGGAGAGTTCTATCCAGGGCACAGAGGATTGGGG
GCAGGAGGA
ORF - retro_ggor_812 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 84.34 % |
| Parental protein coverage: | 52.87 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | RHRHGLWLADVHSEEVSIPFAVEPPSGRGCRLCGQLRGDESGVREMQQPLALPGDRAAPQRQEHRSEKLG |
| RH.HGLWLADVHSEEVSIPFAVEP.SG.G.RL.GQL.G..SGVREMQQPLALPGD.AAPQR.EHRS.KLG | |
| Retrocopy | RHQHGLWLADVHSEEVSIPFAVEPTSGCGLRLHGQLQGNNSGVREMQQPLALPGDQAAPQRHEHRSAKLG |
| Parental | ELQPGHRGLGAGG |
| E..PGHRGLGAGG | |
| Retrocopy | EFYPGHRGLGAGG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 12 .04 RPM |
| SRP007412_cerebellum | 0 .04 RPM | 10 .64 RPM |
| SRP007412_heart | 0 .00 RPM | 10 .76 RPM |
| SRP007412_kidney | 0 .00 RPM | 18 .32 RPM |
| SRP007412_liver | 0 .05 RPM | 21 .68 RPM |
| SRP007412_testis | 0 .00 RPM | 7 .36 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_812 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggor_812 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Gorilla gorilla | ENSGGOG00000014707 | 1 retrocopy |
retro_ggor_812 ,
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