RetrogeneDB ID: | retro_ggor_867 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 12:42035120..42035474(-) | ||
Located in intron of: | ENSGGOG00000028620 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IQCF1 | ||
Ensembl ID: | ENSGGOG00000012462 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.17 % |
Parental protein coverage: | 55.61 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | EKQPKKTKEPSK-EDETQQKEMPTHLSLG---AESKAEAKTPVLVETQTVDNANGKSEKPPENQKKLSDK |
.KQPKK...P....DE.QQK.M..H.S.G......KAEAKT..LV.TQTV.NAN.K..KPPENQKKLSDK | |
Retrocopy | KKQPKKMNKPTHTKDEPQQKDMLAHFSSGPLTSKLKAEAKTLALVKTQTVANANEKFGKPPENQKKLSDK |
Parental | DTVATKIQAWWRGTLVRRALLHAALSACIIQCWWRLILSKILKKRRRA |
D....KIQ.W..GTLV..AL.H.ALS..IIQC.W.LILS.IL..R..A | |
Retrocopy | DMAVIKIQVWCWGTLVHQALWHTALSTRIIQC*WWLILSRILEMRQWA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .04 RPM | 0 .04 RPM |
SRP007412_heart | 0 .00 RPM | 0 .06 RPM |
SRP007412_kidney | 0 .08 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .10 RPM | 35 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000173389 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012462 | 1 retrocopy |
retro_ggor_867 ,
|
Macaca mulatta | ENSMMUG00000004352 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014977 | 1 retrocopy |