RetrogeneDB ID: retro_ggor_883

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 12:65641459..65641657(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENSG00000204136
• Ensembl ID: ENSGGOG00000009067
• Aliases: None
• Description: None

Sequence

>retro_ggor_883
ATGAATGTCAAAGGAAACGTAATTCCTCCAATGCTGGTTGTCTCAACTGCGATTGTTGTGGTTTGGAAATGTATCAACAC
CCAAGAAGGCTCTCTCTTGTGGATGTATCACTTAAAACACCCATAAGTTGTTGACGGCGGCGGGCAGAAGGGCCGGTGGT
TTCCAAGCTGCTTCAACAATGGGACCCACAATCCTCAA

Alignment

ORF - retro_ggor_883 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.64 %
• Parental protein coverage: 66. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MNVKGKVILSMLVVSTVIIVFWEFINSPEGSFLWMYHSKNPEVDDSSAQKGWWFLSWFNYGIHNYQ
          MNVKG.VI..MLVVST.I.V.W..IN..EGS.LWMYH.K.P.V.D...QKG.WF.S.FN.G.HN.Q
Retrocopy MNVKGNVIPPMLVVSTAIVVVWKCINTQEGSLLWMYHLKHP*VVDGGGQKGRWFPSCFNNGTHNPQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.05 RPM	0.34 RPM
SRP007412_cerebellum	0.00 RPM	0.16 RPM
SRP007412_heart	0.00 RPM	0.41 RPM
SRP007412_kidney	0.00 RPM	0.12 RPM
SRP007412_liver	0.00 RPM	0.05 RPM
SRP007412_testis	0.10 RPM	0.41 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_883 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_883 has 1 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Pongo abelii	retro_pabe_936

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000012094	2 retrocopies	retro_chof_1206, retro_chof_642,
Gorilla gorilla	ENSGGOG00000009067	1 retrocopy	retro_ggor_883 ,
Pongo abelii	ENSPPYG00000019565	1 retrocopy	retro_pabe_936,