RetrogeneDB ID: retro_gmax_4

Retrocopy location

• Organism: Soybean (Glycine max)
• Coordinates: 12:493742..494270(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: GLYMA12G00920
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: GLYMA08G05140
• Aliases: None
• Description: None

Sequence

>retro_gmax_4
ATGTTCACTTTTACCAATCGAATACAATTTATGAGCAGTCTGCATTGGATGATGATATATGGTTTATATTACATTCAATT
CACTGTGTATGTTATTGTTATGTTATGCCAATTGCCACCGAAGAAGGTCAGAAACACAATGAGTTCGTCGAACCTGAGAG
ATCTCCAACGCGAATTGGAGAACAAAGCCAACGATCTCAGCAAGCTTCAAAAGGAAATTGCAAAGAATCACCAAATGAGA
AAGAAGTACACACTCCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGAACTGGATTTATTGAAAGATGACACAAATGTTTA
TAAGTTGATTGGGCCAGTACTTGTTAAGCAAGATTTGGCCGAGGCCAATGCAAATGTCCGCAAGAGGATCGAATACATCT
CAGCTGAATTGAAGCGTCTTGATGCCACTGTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAAAGATGCAATACTAAAA
TTGCAACAAAGGATTCAATCACTTCAGGCTGGGAAAGGCAAGGCATAG

Alignment

ORF - retro_gmax_4 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.78 %
• Parental protein coverage: 95.71 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ELRNAMSSSNLRDLQRELENKANDLSKLQKEIAKNHQMRKKYTVQLGENELVLKELDLLKDDANVYKLIG
          ..RN.MSSSNLRDLQRELENKANDLSKLQKEIAKNHQMRKKYT.QLGENELVLKELDLLKDD.NVYKLIG
Retrocopy KVRNTMSSSNLRDLQRELENKANDLSKLQKEIAKNHQMRKKYTLQLGENELVLKELDLLKDDTNVYKLIG

Parental  PVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKDTILKLQQRIQSFQAGKGKA
          PVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKD.ILKLQQRIQS.QAGKGKA
Retrocopy PVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKDAILKLQQRIQSLQAGKGKA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Glycine max was not studied using RNA-Seq expression data.

ChIP-Seq

Glycine max was not studied using ChIP-Seq data.

EST

Glycine max was not studied using EST data.

TSS

Glycine max was not studied using FANTOM5 data.

Lab

retro_gmax_4 was not experimentally validated.

Homology

Retrocopy orthology:

Glycine max does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Glycine max	GLYMA08G05140	1 retrocopy	retro_gmax_4 ,