RetrogeneDB ID: retro_gmor_32

Retrocopy location

• Organism: Cod (Gadus morhua)
• Coordinates: contig513746:602..1019(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSGMOG00000003983
• Aliases: None
• Description: None

Sequence

>retro_gmor_32
ACATCGGCCGCTGTGCCCCGGGTGGCTTTCACTGCCACACTGGGCCAGCGCCTCGGCCCCGTCCCCATTGACATGCCGGT
CAAGTACCAGGGGATCATCTCCAACATGGGCAACGGCTACAACCCGGCCACGGGCATCTTCACCGCCCGGGTGTCCGGCA
TGTACTACTTCAGCTACACCATGTACAACAACAATAACAGTCTAGTGGCCAACTCGGTGATGTCACTGATGAAGAACAGC
CAGCTGATGGTGTCCACCTGGGACATAGGGGATGACGGTAACGACAGTGCCACCAACACCGCCGTGCTGCAACTGGAGGC
CGGAGACAACGTCTACATCAAGCTCTACGCCAACCGCGAGTTATTTGACGATGGCATGCACTACAACACCTTCAGCGGCT
TCCTGCTCTTCCCTCTG

Alignment

ORF - retro_gmor_32 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.29 %
• Parental protein coverage: 88.46 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TSAAQPRVAFSTGLGLPLGPLHIDTTVRYLRIFSNMGNGYNPATGIFTARVSGMYYFRYTMHNNNPQ--S
          TSAA.PRVAF...LG..LGP..ID..V.Y..I.SNMGNGYNPATGIFTARVSGMYYF.YTM.NNN.....
Retrocopy TSAAVPRVAFTATLGQRLGPVPIDMPVKYQGIISNMGNGYNPATGIFTARVSGMYYFSYTMYNNNNSLVA

Parental  NSVMSLMKNSQRMVSTWDTSGSDDNDTATNAAVLQLEEGDNVYTRLYANRQIYDDGANYNTFSGFLLFPL
          NSVMSLMKNSQ.MVSTWD..G.D.ND.ATN.AVLQLE.GDNVY..LYANR...DDG..YNTFSGFLLFPL
Retrocopy NSVMSLMKNSQLMVSTWDI-GDDGNDSATNTAVLQLEAGDNVYIKLYANRELFDDGMHYNTFSGFLLFPL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Gadus morhua was not studied using RNA-Seq expression data.

ChIP-Seq

Gadus morhua was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_gmor_32 retrocopy.

TSS

Gadus morhua was not studied using FANTOM5 data.

Lab

retro_gmor_32 was not experimentally validated.

Homology

Retrocopy orthology:

Gadus morhua does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Gadus morhua	ENSGMOG00000003983	3 retrocopies	retro_gmor_22, retro_gmor_26, retro_gmor_32 ,