RetrogeneDB ID: | retro_hsap_1236 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 13:19878731..19879477(-) | ||
Located in intron of: | ENSG00000237636 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000215349 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL3 | ||
Ensembl ID: | ENSG00000114686 | ||
Aliases: | MRPL3, COXPD9, MRL3, RPML3 | ||
Description: | mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:10379] |
Percent Identity: | 91.2 % |
Parental protein coverage: | 71.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCNGKMATLSVGGK-TVSRFRKATSILEFYREL |
.ALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKE..NGK.A.LSVGGK.TVSRF.KAT..LEFYREL | |
Retrocopy | LALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKESRNGKTAALSVGGK<TVSRFHKATPVLEFYREL |
Parental | GLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHR |
GLP.KQTV.IFN.TDNAAIKPGTPLYAAHF.PGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHR | |
Retrocopy | GLPSKQTVIIFNVTDNAAIKPGTPLYAAHFCPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHR |
Parental | RPGAVATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGHKNCLVKVKDSKLPAYK |
RPG...TGDIGRVWPGTKMPGKMGNIYRT.YGLKVWRINTKHNIIYVNGSVPGHKNCLV.V.DSKLPAYK | |
Retrocopy | RPGDISTGDIGRVWPGTKMPGKMGNIYRTVYGLKVWRINTKHNIIYVNGSVPGHKNCLVRVRDSKLPAYK |
Parental | DLGKNLPFPTYFPDGDEEELPEDLYDENVCQPGAPSITFA |
DLGKNLPFPTYFPDGDEEELPEDLYDENVCQP..PSI.FA | |
Retrocopy | DLGKNLPFPTYFPDGDEEELPEDLYDENVCQPSVPSIMFA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .02 RPM | 53 .59 RPM |
bodymap2_adrenal | 0 .04 RPM | 73 .22 RPM |
bodymap2_brain | 0 .00 RPM | 50 .91 RPM |
bodymap2_breast | 0 .00 RPM | 58 .50 RPM |
bodymap2_colon | 0 .00 RPM | 71 .35 RPM |
bodymap2_heart | 0 .00 RPM | 44 .69 RPM |
bodymap2_kidney | 0 .00 RPM | 90 .15 RPM |
bodymap2_liver | 0 .00 RPM | 51 .77 RPM |
bodymap2_lung | 0 .00 RPM | 32 .79 RPM |
bodymap2_lymph_node | 0 .00 RPM | 44 .28 RPM |
bodymap2_ovary | 0 .00 RPM | 91 .78 RPM |
bodymap2_prostate | 0 .00 RPM | 74 .93 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 51 .44 RPM |
bodymap2_testis | 0 .09 RPM | 103 .84 RPM |
bodymap2_thyroid | 0 .00 RPM | 109 .58 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 53 .49 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_850 |
Gorilla gorilla | retro_ggor_969 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000021216 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014498 | 1 retrocopy | |
Homo sapiens | ENSG00000114686 | 1 retrocopy |
retro_hsap_1236 ,
|
Gorilla gorilla | ENSGGOG00000011128 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009524 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000000501 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015396 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000011179 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .04 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .07 RPM |
CEU_NA12760 | 0 .09 RPM |
CEU_NA12827 | 0 .09 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .13 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .06 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .05 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .06 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .05 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .06 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .08 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .06 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .06 RPM |
TSI_NA20771 | 0 .14 RPM |
TSI_NA20786 | 0 .05 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .08 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .05 RPM |
YRI_NA19114 | 0 .05 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |