RetrogeneDB ID: | retro_hsap_1390 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 14:21189477..21191287(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000259144 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | XPO6 | ||
Ensembl ID: | ENSG00000169180 | ||
Aliases: | XPO6, EXP6, RANBP20 | ||
Description: | exportin 6 [Source:HGNC Symbol;Acc:19733] |
Percent Identity: | 89.29 % |
Parental protein coverage: | 53.78 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MASEEASLRALESLMTEFFHDCTTNERKREIEELLNNFAQQIGAWRFCLYFLSSTRNDYVMMYSLTVFEN |
MASEEA.LRALE.LMTE.FHD.TTNERKREIEELLNN.AQQIGAWRF.LYFLSSTRN.YVMMYSLTVFEN | |
Retrocopy | MASEEAPLRALERLMTELFHDGTTNERKREIEELLNNIAQQIGAWRFFLYFLSSTRNGYVMMYSLTVFEN |
Parental | LINKMWLGVPSQDKMEIRSCLPKLLLAHHKTLPYFIRNKLCKVIVDIGRQDWPMFYHDFFTNILQLIQSP |
LINKMWLGVPSQD.MEI.S.LPKLLLAHHKTLPYFI..K.CKVIVDIGRQD.PMFYHDFFTNILQL.QSP | |
Retrocopy | LINKMWLGVPSQDEMEIHS*LPKLLLAHHKTLPYFIQSKFCKVIVDIGRQDRPMFYHDFFTNILQLNQSP |
Parental | VTTPLGLIMLKTTSEELACPREDLSVARKEELRKLLLDQVQTVLGLLTGILETVWDKHSVTAATPPPSPT |
VTTPLG.IMLKTTSEELACP.EDLSVA.KEEL.KL.LDQVQTVLGLLT.IL.TVWDKHSVTAATPPPSPT | |
Retrocopy | VTTPLGPIMLKTTSEELACPHEDLSVAWKEELQKLPLDQVQTVLGLLTAILGTVWDKHSVTAATPPPSPT |
Parental | SGESGDLLSNLLQSPSSAKLLNQPIPILDVESEYICSLALECLAHLFSWIPLSASITPSLLTTIFHFARF |
.GESGDLLSNL.QSPSSAKLLNQPIPILDV.SEYICSLALECLAHLFS.IPLSA.ITPSLLTT.FHFA.F | |
Retrocopy | -GESGDLLSNLWQSPSSAKLLNQPIPILDVVSEYICSLALECLAHLFSCIPLSAGITPSLLTTTFHFA*F |
Parental | GCDIRARKMASVNGSSQNCVSGQERGRLGVLAMSCINELMSKNCVPMEFEEYLLRMFQQTFYLLQKITKD |
GCDIRARKMASVNGSSQNCVS.QER.R.GVLAM.CI.EL.SK.CVPMEFEEYLL.MFQQTFYLLQKITKD | |
Retrocopy | GCDIRARKMASVNGSSQNCVSVQERSRPGVLAMPCISELISKSCVPMEFEEYLLLMFQQTFYLLQKITKD |
Parental | NNAHTVKSRLEELDESYIEKFTDFLRLFVSVHLRRIESYSQFPVVEFLTLLFKYTFHQPTHEGYFSCLD- |
NNAHTVKSRLEELDES.IEKFTDFL.LFVSVHLRRIESYSQF.VVEFLTLLFKYTFHQPTHEG.FSCLD. | |
Retrocopy | NNAHTVKSRLEELDESFIEKFTDFLWLFVSVHLRRIESYSQFSVVEFLTLLFKYTFHQPTHEG*FSCLD< |
Parental | IWTLFLDYLTSKIKSRLGDKEAVLNRYEDALVLLLTEVLNRIQFRYNQA-QLEELDDETLDDDQQTEWQR |
.WTLFLDYLT.KIKS.L.DKEAVLNRYEDALVLL.TEVLN.IQFRYNQA.QLEELDDETLDDDQQ.E.QR | |
Retrocopy | YWTLFLDYLTNKIKSHLEDKEAVLNRYEDALVLLPTEVLNQIQFRYNQA<QLEELDDETLDDDQQME*QR |
Parental | YLRQSLEVVAKVMELLPTHAFSTLFPVLQDNLEVYLGLQQFIVTSGSGHRLNITAENDCRRLHCSLRDLS |
YLRQSLEV..KVMELLPTH..STLFPVLQ.NLEVYLGLQQ.IVTSGSGHRLNI.AENDC..LHCSLRDLS | |
Retrocopy | YLRQSLEVAVKVMELLPTHTLSTLFPVLQGNLEVYLGLQQVIVTSGSGHRLNIMAENDCWWLHCSLRDLS |
Parental | SLLQAVGRLAEYFIGDVFAARFNDALTVVERLVKVTLYGSQIKLYNI |
SLLQA.G.LA.YFIGDVFAA.FNDALTVVE.LVKVTLYGSQIKLYNI | |
Retrocopy | SLLQAMGHLAGYFIGDVFAAWFNDALTVVESLVKVTLYGSQIKLYNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 51 .92 RPM |
bodymap2_adrenal | 0 .04 RPM | 79 .28 RPM |
bodymap2_brain | 0 .00 RPM | 48 .01 RPM |
bodymap2_breast | 0 .00 RPM | 45 .10 RPM |
bodymap2_colon | 0 .00 RPM | 35 .71 RPM |
bodymap2_heart | 0 .00 RPM | 15 .34 RPM |
bodymap2_kidney | 0 .00 RPM | 44 .88 RPM |
bodymap2_liver | 0 .00 RPM | 26 .26 RPM |
bodymap2_lung | 0 .00 RPM | 60 .25 RPM |
bodymap2_lymph_node | 0 .00 RPM | 81 .32 RPM |
bodymap2_ovary | 0 .12 RPM | 69 .86 RPM |
bodymap2_prostate | 0 .14 RPM | 47 .70 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 17 .61 RPM |
bodymap2_testis | 0 .79 RPM | 96 .17 RPM |
bodymap2_thyroid | 0 .08 RPM | 49 .49 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 258 .28 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_954 |
Gorilla gorilla | retro_ggor_1078 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000169180 | 1 retrocopy |
retro_hsap_1390 ,
|
Gorilla gorilla | ENSGGOG00000005609 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007919 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |