RetrogeneDB ID: | retro_hsap_1565 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 15:48022340..48022862(-) | ||
Located in intron of: | ENSG00000137872 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000213862 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7A | ||
Ensembl ID: | ENSG00000260501 | ||
Aliases: | None | ||
Description: | ribosomal protein L7a [Source:HGNC Symbol;Acc:10364] |
Percent Identity: | 95.4 % |
Parental protein coverage: | 65.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVD |
..L.KLAHKYRPETKQEKKQRLLA.AEKKAAGKGDVPTKRPPVLRAGV.TVTTLV.NKKAQLV.IAHDVD | |
Retrocopy | SELHKLAHKYRPETKQEKKQRLLAWAEKKAAGKGDVPTKRPPVLRAGVDTVTTLVDNKKAQLVLIAHDVD |
Parental | PIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDE |
PIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDE | |
Retrocopy | PIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDE |
Parental | IRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG |
IRRHWGGNVL.PKSVARIAKLEKAKAKELATKLG | |
Retrocopy | IRRHWGGNVLDPKSVARIAKLEKAKAKELATKLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .10 RPM | 0 .00 RPM |
bodymap2_adrenal | 0 .29 RPM | 0 .00 RPM |
bodymap2_brain | 0 .02 RPM | 0 .00 RPM |
bodymap2_breast | 0 .02 RPM | 0 .00 RPM |
bodymap2_colon | 0 .12 RPM | 0 .00 RPM |
bodymap2_heart | 0 .00 RPM | 0 .00 RPM |
bodymap2_kidney | 0 .12 RPM | 0 .00 RPM |
bodymap2_liver | 0 .02 RPM | 0 .00 RPM |
bodymap2_lung | 0 .05 RPM | 0 .00 RPM |
bodymap2_lymph_node | 0 .33 RPM | 0 .00 RPM |
bodymap2_ovary | 0 .06 RPM | 0 .00 RPM |
bodymap2_prostate | 0 .52 RPM | 0 .00 RPM |
bodymap2_skeletal_muscle | 0 .27 RPM | 0 .00 RPM |
bodymap2_testis | 0 .06 RPM | 0 .00 RPM |
bodymap2_thyroid | 0 .02 RPM | 0 .00 RPM |
bodymap2_white_blood_cells | 0 .37 RPM | 0 .00 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_44120 | 704 libraries | 852 libraries | 269 libraries | 3 libraries | 1 library |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1190 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000260501 | 36 retrocopies |
retro_hsap_1031, retro_hsap_1103, retro_hsap_1157, retro_hsap_1327, retro_hsap_1340, retro_hsap_1402, retro_hsap_1435, retro_hsap_1565 , retro_hsap_1656, retro_hsap_1936, retro_hsap_1937, retro_hsap_2016, retro_hsap_2172, retro_hsap_218, retro_hsap_2476, retro_hsap_261, retro_hsap_2697, retro_hsap_2806, retro_hsap_2893, retro_hsap_2931, retro_hsap_297, retro_hsap_3060, retro_hsap_3572, retro_hsap_3603, retro_hsap_3749, retro_hsap_3766, retro_hsap_377, retro_hsap_3873, retro_hsap_3877, retro_hsap_4135, retro_hsap_4141, retro_hsap_612, retro_hsap_660, retro_hsap_750, retro_hsap_767, retro_hsap_771,
|
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .60 RPM |
CEU_NA11843 | 0 .63 RPM |
CEU_NA11930 | 1 .04 RPM |
CEU_NA12004 | 0 .46 RPM |
CEU_NA12400 | 0 .60 RPM |
CEU_NA12751 | 0 .27 RPM |
CEU_NA12760 | 0 .90 RPM |
CEU_NA12827 | 0 .47 RPM |
CEU_NA12872 | 0 .35 RPM |
CEU_NA12873 | 0 .70 RPM |
FIN_HG00183 | 0 .71 RPM |
FIN_HG00277 | 0 .52 RPM |
FIN_HG00315 | 0 .44 RPM |
FIN_HG00321 | 0 .51 RPM |
FIN_HG00328 | 0 .43 RPM |
FIN_HG00338 | 0 .43 RPM |
FIN_HG00349 | 0 .88 RPM |
FIN_HG00375 | 0 .46 RPM |
FIN_HG00377 | 0 .43 RPM |
FIN_HG00378 | 0 .49 RPM |
GBR_HG00099 | 0 .41 RPM |
GBR_HG00111 | 0 .39 RPM |
GBR_HG00114 | 0 .50 RPM |
GBR_HG00119 | 0 .41 RPM |
GBR_HG00131 | 0 .60 RPM |
GBR_HG00133 | 0 .55 RPM |
GBR_HG00134 | 0 .31 RPM |
GBR_HG00137 | 0 .47 RPM |
GBR_HG00142 | 0 .28 RPM |
GBR_HG00143 | 0 .19 RPM |
TSI_NA20512 | 0 .34 RPM |
TSI_NA20513 | 0 .39 RPM |
TSI_NA20518 | 1 .05 RPM |
TSI_NA20532 | 0 .34 RPM |
TSI_NA20538 | 0 .46 RPM |
TSI_NA20756 | 0 .76 RPM |
TSI_NA20765 | 0 .27 RPM |
TSI_NA20771 | 0 .99 RPM |
TSI_NA20786 | 0 .24 RPM |
TSI_NA20798 | 0 .22 RPM |
YRI_NA18870 | 0 .74 RPM |
YRI_NA18907 | 0 .28 RPM |
YRI_NA18916 | 0 .34 RPM |
YRI_NA19093 | 0 .36 RPM |
YRI_NA19099 | 0 .37 RPM |
YRI_NA19114 | 0 .60 RPM |
YRI_NA19118 | 0 .27 RPM |
YRI_NA19213 | 0 .24 RPM |
YRI_NA19214 | 0 .15 RPM |
YRI_NA19223 | 0 .16 RPM |