RetrogeneDB ID: | retro_hsap_2754 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:14614358..14616296(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000234123 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHBDF1 | ||
Ensembl ID: | ENSG00000007384 | ||
Aliases: | RHBDF1, C16orf8, Dist1, EGFR-RS, gene-89, gene-90, hDist1 | ||
Description: | rhomboid 5 homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:20561] |
Percent Identity: | 86.88 % |
Parental protein coverage: | 75.79 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | RESVAKMSFRAAAALMKGRSVRDGTFRRAQRRSFTPASFLEEDTTDFPDELDTSFFAREGILHEELSTYP |
RE.VAKMSF.AAAALMKG.S.RDGT.R.AQRRSFTPASFL.E.T..FPDE.DTSFFA.EGILHEELSTYP | |
Retrocopy | RELVAKMSFHAAAALMKGCSIRDGTLRWAQRRSFTPASFLAENT-NFPDEMDTSFFAQEGILHEELSTYP |
Parental | DEVFESPSEAALKDWEKAPEQADLTGGALDRSELERSHLMLPLERGWRKQKEGAAAPQPKVRLRQEVVST |
DEVFESPSEAALKDWEKAPEQ..LTG.ALDRSELE.SHLMLPLERGWRK..E..AA.QPKVRLRQE.VST | |
Retrocopy | DEVFESPSEAALKDWEKAPEQEYLTGRALDRSELEPSHLMLPLERGWRK-REDTAASQPKVRLRQEMVST |
Parental | AGPRRGQRIAVPVRKLFAREKRPYGLGMVGRLTNRTYRKRIDSFVKRQIEDMDDHRPFFTYWLTFVHSLV |
AGPRR.QRIAVPVRKLFAREKR.YGL.MVGRL.N.TY.K.IDSFVKRQIEDMD.HRPFFT.WLTFVH.LV | |
Retrocopy | AGPRRNQRIAVPVRKLFAREKRLYGLSMVGRLNNHTYHKHIDSFVKRQIEDMDSHRPFFTHWLTFVHLLV |
Parental | TILAVCIYGIAPVGFSQHETVDSVLRNRGVYENVKYVQQENFWIGPSSEALIHLGAKFSPCMRQDPQVHS |
TILAVCIYGI.PV.FSQHET.DS.L.N..VYENVKYVQQENFWIGPSSEALIHLGAKFSPC..QDPQVHS | |
Retrocopy | TILAVCIYGIVPVDFSQHETMDSILWNHWVYENVKYVQQENFWIGPSSEALIHLGAKFSPCICQDPQVHS |
Parental | FIRSAREREKHSACCVRNDRSGCVQTSEEECSSTLAVWVKWPIHPSAPELAGHKRQFGSVCHQDPRVCDE |
FIR..RE.EKHSACC..NDRSGC.QTSEEECS..LA.WVK.PIH.SAPELAGHKRQFGSVCHQDPRV.DE | |
Retrocopy | FIRAGREHEKHSACCMHNDRSGCLQTSEEECSPMLAMWVK*PIHSSAPELAGHKRQFGSVCHQDPRVYDE |
Parental | PSSEDPHEWPEDITKWPICTKNSAGNHTNHPHMDCVITGRPCCIGTKGRCEITSREYCDFMRGYFHEEAT |
PS.EDP.EWPEDITKWPICT.N..GNHTN.PHMDCVITGRPCCIGT.G.CEITSREYCDFMRGYFHEEA. | |
Retrocopy | PSWEDPREWPEDITKWPICTRNNPGNHTNLPHMDCVITGRPCCIGTNGECEITSREYCDFMRGYFHEEAM |
Parental | LCSQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYL |
LCSQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLH..ILH.LVSICFQMT..RDLEKLAGWH.IAIIYL | |
Retrocopy | LCSQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHTRILHYLVSICFQMTIPRDLEKLAGWHHIAIIYL |
Parental | LSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWI |
LSGVTGNLASAIFL.YRAEV.PAGSQFGILACLF.ELFQSWQIL.RPW.AFFKLLAVVLFL.TFGLLPWI | |
Retrocopy | LSGVTGNLASAIFLLYRAEVVPAGSQFGILACLFMELFQSWQILERPWHAFFKLLAVVLFLCTFGLLPWI |
Parental | DNFAHISGFISGLFLSFAFLPYISFGKFDLYRKRCQIIIFQVVFLGLLAGLVVLFYVYPVRCEWCEFLTC |
DNFAHISGFISGLFLSFAF..YISF.KF.LY.K.C.IIIFQVVFLGLLAGLVVLFY.YPV..EWCEFLTC | |
Retrocopy | DNFAHISGFISGLFLSFAF*RYISFSKFHLYWKCCLIIIFQVVFLGLLAGLVVLFYFYPVCREWCEFLTC |
Parental | IPFTDKFCEKYELDAQLH |
IPFTD.FCEKYELDAQLH | |
Retrocopy | IPFTDNFCEKYELDAQLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 14 .49 RPM |
bodymap2_adrenal | 0 .00 RPM | 12 .32 RPM |
bodymap2_brain | 0 .00 RPM | 4 .24 RPM |
bodymap2_breast | 0 .00 RPM | 11 .83 RPM |
bodymap2_colon | 0 .00 RPM | 7 .04 RPM |
bodymap2_heart | 0 .00 RPM | 6 .89 RPM |
bodymap2_kidney | 0 .19 RPM | 8 .27 RPM |
bodymap2_liver | 0 .00 RPM | 1 .27 RPM |
bodymap2_lung | 0 .00 RPM | 35 .13 RPM |
bodymap2_lymph_node | 0 .00 RPM | 11 .99 RPM |
bodymap2_ovary | 0 .00 RPM | 24 .81 RPM |
bodymap2_prostate | 0 .00 RPM | 17 .25 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 8 .40 RPM |
bodymap2_testis | 0 .45 RPM | 9 .82 RPM |
bodymap2_thyroid | 0 .00 RPM | 16 .04 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .00 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
HY004476 | 14615192 | 14615631 | 100 | 438 | 0 | 438 |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1862 |
Gorilla gorilla | retro_ggor_1916 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000007384 | 1 retrocopy |
retro_hsap_2754 ,
|
Gorilla gorilla | ENSGGOG00000028110 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006895 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007527 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |