RetrogeneDB ID: | retro_hsap_3820 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 7:16624485..16626314(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000224280 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATXN2L | ||
Ensembl ID: | ENSG00000168488 | ||
Aliases: | ATXN2L, A2D, A2LG, A2LP, A2RP | ||
Description: | ataxin 2-like [Source:HGNC Symbol;Acc:31326] |
Percent Identity: | 87.6 % |
Parental protein coverage: | 58.52 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | ATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILAPQPPPPQQHQERPGAAAIGSARGQSTGKGPPQSP |
A..AAPP.PPAA.S.CLGP..AAGSGLR.GAE.IL..QPPP.QQH.ERPGAAAIGSARGQSTGKGPPQSP | |
Retrocopy | ASYAAPPRPPAASSACLGP-SAAGSGLRWGAESILTTQPPPQQQHHERPGAAAIGSARGQSTGKGPPQSP |
Parental | VFEGVYNNSRMLHFLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVDAVHRKASEPAGGPRREDIVDT |
VFEGVYNNSRMLHFLTAVVGSTCDVKVKNGTTYEGIFKTLSS.FELA.D.VH.KASEPA.GPRRED.VDT | |
Retrocopy | VFEGVYNNSRMLHFLTAVVGSTCDVKVKNGTTYEGIFKTLSSHFELAEDIVHQKASEPAAGPRREDTVDT |
Parental | MVFKPSDVMLVHFRNVDFNYATKDKFTDSAIAMNSKV-NGEHKEKVLQRWEGGDSNSDDYDLESDMSNGW |
MVFKPSDVMLVHFRN.DFNYATKDKFTDSAIAMNSK..NGEHKEKVLQRWE.GDSNSD.YDLES.MSNGW | |
Retrocopy | MVFKPSDVMLVHFRNADFNYATKDKFTDSAIAMNSKG<NGEHKEKVLQRWERGDSNSDNYDLESNMSNGW |
Parental | DPNEMFKFNEENYGVKTTYDSSLSSYTVPLEKDNSEEFRQRELRAAQLAREIESSPQYRLRIAMENDDGR |
DPNEMFKFNEENYGVKTTYDSSLS.YTVPLEKDNS.EF...ELRAAQLA.EIESSPQY.LRIAME.DDGR | |
Retrocopy | DPNEMFKFNEENYGVKTTYDSSLSPYTVPLEKDNSKEFQL*ELRAAQLAPEIESSPQYHLRIAMESDDGR |
Parental | TEEEKHSAVQRQGSGRESPSLASREGKYI-PLPQRVREGPRGGVRCSSSRGGRPGLSSLPPRGPHHLDNS |
TEEEKH.AVQRQGSGRESPSLASR.GKYI.PLPQRV.EGPRGGV..SS..G..PGLS.L.PRGP.HLDNS | |
Retrocopy | TEEEKHRAVQRQGSGRESPSLASRKGKYIIPLPQRVQEGPRGGV*RSSPLGSQPGLSNLSPRGPRHLDNS |
Parental | SPGPGSEARGINGGPSRMSPKAQRPLRGAKTLSSPSNRPSGETSVPPPPAVGRMYPPRSPKSAAPAPISA |
.PGPGSEARGINGGPS.MSPKAQRPLRGAKTLSSP.NRPSGETSVPPP.AVGRMYPP.SP.SAAPAPIS. | |
Retrocopy | NPGPGSEARGINGGPSHMSPKAQRPLRGAKTLSSPTNRPSGETSVPPP-AVGRMYPPSSPRSAAPAPISP |
Parental | SCPEPPIGSAVPTSSASIPVTSSVSDPGVGSISPASPKISLAPTDVKELSTKEPGRTLEPQELARIAGKV |
SCPE.PIG.AVPTSSASIPVTSSVSDPG.G.IS.ASPKISLAPTDVKELST.EPGRTL.PQ.LA.IA.KV | |
Retrocopy | SCPELPIGLAVPTSSASIPVTSSVSDPGMGYISSASPKISLAPTDVKELSTTEPGRTLDPQ*LAQIAEKV |
Parental | PGLQNEQKRFQLEELRKFGAQFKLQPSSSPENSLDPFPPRILKEEPKGKEKEVDGLLTSEPMGSPVSSKT |
PGLQNEQK.F.LEELRK.GAQF.LQPSSSPENSLDPFPP..LKEE.KGKEKE.DGLLTSEPMGSPVSSKT | |
Retrocopy | PGLQNEQKLFHLEELRKCGAQFNLQPSSSPENSLDPFPPWTLKEEAKGKEKEDDGLLTSEPMGSPVSSKT |
Parental | ESVSDKEDKPPLAPSGGTEGPEQPPPPCPSQTGSPPVGLIKGEDKDEGPVAEQ |
ESVSDKEDKPPLAP.GGTEGPE.PPPPCPSQTGS.P.GLIKGEDKDEGP.AEQ | |
Retrocopy | ESVSDKEDKPPLAPAGGTEGPEPPPPPCPSQTGSLPFGLIKGEDKDEGPIAEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 56 .47 RPM |
bodymap2_adrenal | 0 .00 RPM | 72 .63 RPM |
bodymap2_brain | 0 .00 RPM | 37 .81 RPM |
bodymap2_breast | 0 .06 RPM | 29 .84 RPM |
bodymap2_colon | 0 .00 RPM | 46 .95 RPM |
bodymap2_heart | 0 .00 RPM | 19 .40 RPM |
bodymap2_kidney | 0 .00 RPM | 40 .47 RPM |
bodymap2_liver | 0 .00 RPM | 18 .46 RPM |
bodymap2_lung | 0 .00 RPM | 81 .59 RPM |
bodymap2_lymph_node | 0 .00 RPM | 103 .65 RPM |
bodymap2_ovary | 0 .04 RPM | 71 .31 RPM |
bodymap2_prostate | 0 .05 RPM | 56 .36 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 44 .87 RPM |
bodymap2_testis | 0 .09 RPM | 174 .90 RPM |
bodymap2_thyroid | 0 .00 RPM | 51 .30 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 78 .02 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2598 |
Gorilla gorilla | retro_ggor_2570 |
Macaca mulatta | retro_mmul_1631 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000168488 | 1 retrocopy |
retro_hsap_3820 ,
|
Gorilla gorilla | ENSGGOG00000014112 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003298 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007938 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |