RetrogeneDB ID: | retro_hsap_4664 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:27882075..27882498(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000233243 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VKORC1 | ||
Ensembl ID: | ENSG00000167397 | ||
Aliases: | VKORC1, EDTP308, IMAGE3455200, MST134, MST576, VKCFD2, VKOR | ||
Description: | vitamin K epoxide reductase complex, subunit 1 [Source:HGNC Symbol;Acc:23663] |
Percent Identity: | 86.62 % |
Parental protein coverage: | 87.12 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LSLYALHVKAARARDRDYRALCDVGTAISCSRVFSSRWGRGFGLVEHVLGQDSILNQSNSIFGCIFYTLQ |
..L.ALHVKAARARDRDYRALCDVGTAISC.RVFSSR.GRGFGLVEHVLGQDSILNQS..IF.C..YT.Q | |
Retrocopy | VALCALHVKAARARDRDYRALCDVGTAISCPRVFSSR*GRGFGLVEHVLGQDSILNQSDNIFPCVLYTVQ |
Parental | LLLGCLRTRWASVLMLLSSLVSLAGSVYLAWILFFVLYDFCIVCITTYAINVSLMWLSFRKVQEPQGKAK |
.LLGCLRTRWASVL.LLSSL.SLAGSVYLA.ILFFVLYD.CIVCITTYAINV.LMWLSFRK.QEPQGKAK | |
Retrocopy | -LLGCLRTRWASVLRLLSSLLSLAGSVYLA*ILFFVLYDCCIVCITTYAINVGLMWLSFRKLQEPQGKAK |
Parental | RH |
R. | |
Retrocopy | RY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 9 .64 RPM |
bodymap2_adrenal | 0 .00 RPM | 15 .17 RPM |
bodymap2_brain | 0 .02 RPM | 4 .64 RPM |
bodymap2_breast | 0 .00 RPM | 14 .40 RPM |
bodymap2_colon | 0 .00 RPM | 18 .47 RPM |
bodymap2_heart | 0 .00 RPM | 4 .49 RPM |
bodymap2_kidney | 0 .00 RPM | 17 .06 RPM |
bodymap2_liver | 0 .00 RPM | 44 .36 RPM |
bodymap2_lung | 0 .00 RPM | 13 .38 RPM |
bodymap2_lymph_node | 0 .00 RPM | 25 .24 RPM |
bodymap2_ovary | 0 .00 RPM | 13 .24 RPM |
bodymap2_prostate | 0 .00 RPM | 27 .12 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 2 .40 RPM |
bodymap2_testis | 0 .09 RPM | 17 .80 RPM |
bodymap2_thyroid | 0 .00 RPM | 11 .17 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 10 .63 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_199152 | 648 libraries | 581 libraries | 433 libraries | 124 libraries | 43 libraries |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_3099 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000003097 | 1 retrocopy | |
Homo sapiens | ENSG00000167397 | 1 retrocopy |
retro_hsap_4664 ,
|
Oryctolagus cuniculus | ENSOCUG00000002289 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000016146 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000007306 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008031 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |