RetrogeneDB ID: | retro_hsap_950 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 12:6586996..6589373(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000256913 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PKP2 | ||
Ensembl ID: | ENSG00000057294 | ||
Aliases: | PKP2, ARVD9 | ||
Description: | plakophilin 2 [Source:HGNC Symbol;Acc:9024] |
Percent Identity: | 89.36 % |
Parental protein coverage: | 95.22 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | AGSSGRGGQTVKSLRIQEQVQQTLARKGRSSVGNGNLHRTSSVPEYVYNLHLVENDFVGGRSPVPKTYDM |
AG...R..Q.VKSLRIQEQVQQ.LARKGRSSVGNGNLHRTSSVPEYVYNLHLVENDFVGGRSPVPKTY.M | |
Retrocopy | AGWEQRPRQPVKSLRIQEQVQQILARKGRSSVGNGNLHRTSSVPEYVYNLHLVENDFVGGRSPVPKTYYM |
Parental | LKAGTTATYEGRWGRGTAQYSSQKSVEERSLRHPLRRLEISPDSSPERAHYTHSDYQYSQRSQAGHTLHH |
LKAGTTATYEGRWGRGTAQYSSQKSVEER.LRHPLRRLEISPDSSPERAHYTHSDYQYSQRSQAGHTLHH | |
Retrocopy | LKAGTTATYEGRWGRGTAQYSSQKSVEERYLRHPLRRLEISPDSSPERAHYTHSDYQYSQRSQAGHTLHH |
Parental | QESRRAALLVPPRYARSEIVGVSRAGTTSRQRHFDT-YHRQYQHGSVSDTVFDSIPANPALLTYPRPGTS |
QESRRAA.LVPPRY.RSEI.GV.R.G.T....H.....HRQYQ.GSVSDTVFDSIPANPALLTYPRPGTS | |
Retrocopy | QESRRAAFLVPPRYDRSEIAGVRRTG-TTSRQHHFD<HHRQYQRGSVSDTVFDSIPANPALLTYPRPGTS |
Parental | RSMGNLLEKENYLTAGLTVGQVRPLVPLQPVTQNRASRSSWHQSSFHSTRTLREAGPSVAVDSSGRRAHL |
RSMGNLLEKENYL.AGLTVGQVRPLVPL.P.TQNRASRSSWH.SSFHSTRT.R.AGPSVAVDSSGRRAHL | |
Retrocopy | RSMGNLLEKENYLRAGLTVGQVRPLVPLRPLTQNRASRSSWHRSSFHSTRTPRKAGPSVAVDSSGRRAHL |
Parental | TVGQAAAGGSGNLLTERSTFTDSQLGNADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARK |
TVGQAAAGGSGNLLT.RST..DSQLGNADMEMTLERA.SML.AD.M.PSRISAAATFIQHECFQKSEA.K | |
Retrocopy | TVGQAAAGGSGNLLTQRST--DSQLGNADMEMTLERAGSMLDADQMPPSRISAAATFIQHECFQKSEAGK |
Parental | RVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQIT |
RVNQ..GI.KLLQLLKVQNEDVQRAV.GALRNL.FEDNDNKLEVAELNGV.RLLQVLKQTR.LETKKQ.T | |
Retrocopy | RVNQFCGIPKLLQLLKVQNEDVQRAVWGALRNLLFEDNDNKLEVAELNGVTRLLQVLKQTRVLETKKQLT |
Parental | GLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNV-TGCLRNMSSAGADG |
GLLWNLSSNDKLKNLMITEALL.LTENIII.FSGWPEGDYPKANGLLDFD..YN..TGCLRNMS.AG.D. | |
Retrocopy | GLLWNLSSNDKLKNLMITEALLMLTENIIISFSGWPEGDYPKANGLLDFDTVYNP<TGCLRNMSAAGPDR |
Parental | RKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQLEAELPEKYSQNIYIQNRNIQTDNN |
RKAMRRCD.LIDSLVHYVRGTIADYQPDDKATENCV.ILHNLSYQLE.ELPEKYSQNIYIQN.N.QT.NN | |
Retrocopy | RKAMRRCDRLIDSLVHYVRGTIADYQPDDKATENCVHILHNLSYQLEVELPEKYSQNIYIQNPNVQT-NN |
Parental | KSIGCFGSRSRKVKEQYQDVPMPEEKSNPKGVEWLWHSIVIRMYLSLIAKSVRNYTQEASLGALQNLTAG |
KSIGCFGSRSRK.KEQY.D.PMPEEKSNPKGVEWL.HSIVIRMYLSLIAKSV.NYTQEASLGALQNLTAG | |
Retrocopy | KSIGCFGSRSRKLKEQY*DMPMPEEKSNPKGVEWL*HSIVIRMYLSLIAKSVPNYTQEASLGALQNLTAG |
Parental | SGPMPTSVAQTVVQKESGLQHTRKMLHVGDPSVKKTAISLLRNLSRNLSLQNEIAKETLPDLVSIIPDTV |
SGPMPTSVAQTVVQKE.GLQHTRKM.HV.DPSVKKTA..LLRNLS.NLSLQN.IAKETLP.LVSIIPDTV | |
Retrocopy | SGPMPTSVAQTVVQKENGLQHTRKMVHVSDPSVKKTANLLLRNLSQNLSLQNKIAKETLPSLVSIIPDTV |
Parental | PSTDLLIETTASACYTLNNIIQNSYQNARDLLNTGGIQKIMAISAGDAYASNKASKAASVLLYSLWAHTE |
PSTDLLIETTASACY.LNN.IQNSYQNA..L.NTGGIQKIM.ISAGDAYASNKASKAAS.LLYSL.AHTE | |
Retrocopy | PSTDLLIETTASACYMLNNVIQNSYQNAQRLPNTGGIQKIMTISAGDAYASNKASKAASILLYSL*AHTE |
Parental | LHHAYKKAQFKKTDFVNSRTAKAYHSLKD |
LHHAYKKAQFKKTDFVNS.T.KAYHSLKD | |
Retrocopy | LHHAYKKAQFKKTDFVNSWTVKAYHSLKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 39 .80 RPM |
bodymap2_adrenal | 0 .31 RPM | 7 .12 RPM |
bodymap2_brain | 0 .21 RPM | 5 .18 RPM |
bodymap2_breast | 0 .14 RPM | 6 .15 RPM |
bodymap2_colon | 0 .00 RPM | 13 .46 RPM |
bodymap2_heart | 0 .02 RPM | 651 .75 RPM |
bodymap2_kidney | 0 .00 RPM | 13 .81 RPM |
bodymap2_liver | 0 .00 RPM | 29 .49 RPM |
bodymap2_lung | 0 .00 RPM | 3 .48 RPM |
bodymap2_lymph_node | 0 .00 RPM | 8 .30 RPM |
bodymap2_ovary | 0 .08 RPM | 45 .90 RPM |
bodymap2_prostate | 0 .21 RPM | 9 .89 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 10 .28 RPM |
bodymap2_testis | 0 .02 RPM | 23 .19 RPM |
bodymap2_thyroid | 0 .09 RPM | 2 .98 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 1 .69 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_657 |
Gorilla gorilla | retro_ggor_766 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000057294 | 1 retrocopy |
retro_hsap_950 ,
|
Gorilla gorilla | ENSGGOG00000002106 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016650 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004820 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .15 RPM |
CEU_NA11843 | 0 .20 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .11 RPM |
CEU_NA12751 | 0 .15 RPM |
CEU_NA12760 | 0 .09 RPM |
CEU_NA12827 | 0 .09 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .14 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .06 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .09 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .13 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .05 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .14 RPM |
GBR_HG00134 | 0 .07 RPM |
GBR_HG00137 | 0 .19 RPM |
GBR_HG00142 | 0 .08 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .07 RPM |
TSI_NA20518 | 0 .17 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .14 RPM |
TSI_NA20756 | 0 .06 RPM |
TSI_NA20765 | 0 .04 RPM |
TSI_NA20771 | 0 .14 RPM |
TSI_NA20786 | 0 .05 RPM |
TSI_NA20798 | 0 .16 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .07 RPM |
YRI_NA18916 | 0 .08 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .10 RPM |
YRI_NA19118 | 0 .10 RPM |
YRI_NA19213 | 0 .07 RPM |
YRI_NA19214 | 0 .05 RPM |
YRI_NA19223 | 0 .04 RPM |