RetrogeneDB ID: | retro_hvul_22 | ||
Retrocopylocation | Organism: | Barley (Hordeum vulgare) | |
Coordinates: | 7:442958653..442959373(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | MLOC_39202 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | MLOC_12641 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.02 % |
Parental protein coverage: | 89.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TYAAHALAAAAAAMVLVWCIHFRGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVFPG-LNHDT |
T...H.LA..A...VL.WCI.FRGGLAF...NK..IFNV.P.LMLIG......EAI..Y..FP.....D. | |
Retrocopy | TLVVHVLAVVATVLVLLWCIGFRGGLAFRSSNKQQIFNVPPPLMLIGLVVIAGEAILAYRTFPASVSRDA |
Parental | AKLTHLILHAIAIVLGAVGIYCAFKFHNDSGIANLYSLHSWLGIGAISLYGIQWIFGFVTFFFPGAAPDV |
.K..HL.LHA.....G.VG.Y..FKFH....I.NLYSLH.W.GI..I.LY..QW..GF..FFFPGAAP.. | |
Retrocopy | RKKAHLALHAAGLAVGLVGVYAVFKFHAEADIPNLYSLHAWIGIATITLYALQWLAGFLAFFFPGAAPET |
Parental | RRGALPWHALFGLFVYVLTLATAELGFLEKMTFLQSSG---LDKYGPEALLVNFTALVVVLLGAAVVVAA |
RR.A.PWHA..GL.V..L....A.LGFLEK.TFLQS.......KYG.EALLVNFTA..V.LLG.AVV.A. | |
Retrocopy | RRSAVPWHAVLGLLVFALAVGNAQLGFLEKLTFLQSPPARLVGKYGAEALLVNFTAVIVLLLGIAVVIAT |
Parental | VAPAAT |
V...AT | |
Retrocopy | VNADAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Zea mays | GRMZM2G034668 | 1 retrocopy | |
Leersia perrieri | LPERR04G16060 | 1 retrocopy | |
Hordeum vulgare | MLOC_12641 | 1 retrocopy |
retro_hvul_22 ,
|
Oryza sativa japonica | OS04G0533500 | 1 retrocopy | |
Physcomitrella patens | PP1S194_18V6 | 1 retrocopy | |
Sorghum bicolor | Sb06g023650 | 1 retrocopy | |
Setaria italica | Si010957m.g | 1 retrocopy |