>retro_hvul_3
ATGCAAAACATATCGGCACCAGCAGTTGAGCAAACCCAGCAAAGCTCACTCACTCTAGTGATCACTTTCACTTGGCAACC
CAGGAAGCGATCGAGGGAAGCAGCCATGATGCTTCGCATGCAAAGCCTCTGCCCTCCTCGTCGTGTGTCGGTGGACGGCC
CGATCATCGTCGGCGCCGGCCCCTCCGGGCTCGCCGTGGCGGCCAGCCTCGGCGAGGAGGGCATGCCGTTCCTCATGCTG
GAGCGCGAGGACTGCATCGCCTCGCTCTGGCAGAAGCGCACCTACGACCGCGTCAAGCTCCACCTCCCCAAGCACTTCTG
CGAGCTCCCTCGCATGCCCTTCCCGGACAGCTACCCGGAGTACCCCACCCGCCGCCAGTTCATCGACTACCTCGAGACCT
ACGCCGCCAGGTTCGACATCAAGCCGGAGTTCAACACCACCGTGCTCTCCGCCCACTACGACAACACCTCCGGGCTCTGG
CACGCGCAGGCCACCCGCGCGGGCGGCGCCCAGGTGGAGTACATCGGCCGCTGGCTCGTGGTCGCCACCGGCGAGAACGC
CGTCAACGTCGTCCCGGACATCCCGGGCCTCGGCGGCTTCTGCGGCGAGGTCACCCACGTCAGCCACTACAAGTCCGGCG
AGCCCTACAACGGGAAGCGCGTGCTCGTCGTCGGCTGCGGGAACTCCGGCATGGAGGTCTCCCTCGACCTCTGCGACCAC
GGCGCCCACCCTTTCATGGTGGTGCGCGACGCCATGCACGTCATTCCGCGCGAGGTGCTCGGCAAGTCCACCTTCGAGCT
CGCCATGCTGCTCATGGCGTGGCTCCCGCTCTGGTTCGTGGACAAGATCATGATCTTCCTCGCCTGGCTCGTCCTCGGCG
ACCTCGACAAGCTCGGCATCCACCGCCCGGCTGTCGGCCCGCTCACGCTCAAGCACACGCAGGGACGGGCCCCGGTGCTC
GACACCGGCGCGCTCGCCAGGATTAGGAGTGGCCAAATCACCGTCGTCCCCGGCATCACCCGCTTCACGAACTCCGACGC
CGTGCTGTCCGATGGCACCGCCGTCCATGTCGATGCTGTCATCCTCGCCACCGGATACAGAAGCAATGTGCCACAGTGGC
TCCGGGCAACGGACTTCTTCGGCAAGGACGGCTACCCGAAGACGGAGTTCCCCAACGGCTGGAAGGGCCAGTTTGGCCTC
TACTCCGTCGGCTTCGCACGCCGCGGCATCTCCGGTGCCTCCGCCGATGCCGTGCGCATCGCCAAGGACCTCTGCCAGCT
CTGGAAGGAGGAGACCACGCCCACAAAGAAGGCCGGCCGGCCATCCTACAGGAGGTCTATCTCCGTCGTCTTGTAA
ORF - retro_hvul_3 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
57.26 % |
Parental protein coverage: |
86.73 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | VPGPIIVGAGPSGLAVAACLKEKGVDSLILERSNCIASLWQLKTYDRLSLHLPRQFCELPLMPFPADYPI |
| V.GPIIVGAGPSGLAVAA.L.E.G...L.LER..CIASLWQ..TYDR..LHLP..FCELP.MPFP..YP. |
Retrocopy | VDGPIIVGAGPSGLAVAASLGEEGMPFLMLEREDCIASLWQKRTYDRVKLHLPKHFCELPRMPFPDSYPE |
|
Parental | YPSKEKFVAYLEKYAARFGICPRYNHAVVRAEYDEKLLLWRVRSQLTGRMEEEVEYLSRWLVVATGENAE |
| YP....F..YLE.YAARF.I.P..N..V..A.YD....LW.......G.....VEY..RWLVVATGENA. |
Retrocopy | YPTRRQFIDYLETYAARFDIKPEFNTTVLSAHYDNTSGLWHAQATRAGGAQ--VEYIGRWLVVATGENAV |
|
Parental | VVQPEIDGLKEFKGTVVHTSAYKTGSAFAGKRVLVVGCGNSGMEVCLDLCDHNAQPHIVVRDTVHILPRE |
| .V.P.I.GL..F.G.V.H.S.YK.G....GKRVLVVGCGNSGMEV.LDLCDH.A.P..VVRD..H..PRE |
Retrocopy | NVVPDIPGLGGFCGEVTHVSHYKSGEPYNGKRVLVVGCGNSGMEVSLDLCDHGAHPFMVVRDAMHVIPRE |
|
Parental | MLGQSTFGLSMWLLKWFPVHVVDRILLLVARTMLGDTARLGLKRPTVGPLELKSLSGKTPVLDVGTFAKI |
| .LG.STF.L.M.L..W.P...VD.I....A...LGD...LG..RP.VGPL.LK...G..PVLD.G..A.I |
Retrocopy | VLGKSTFELAMLLMAWLPLWFVDKIMIFLAWLVLGDLDKLGIHRPAVGPLTLKHTQGRAPVLDTGALARI |
|
Parental | RSGDIKVLPGIKKISGRQVEFLDTRSEDFDAIVLATGYKSNVPFWLKDRELFSDKDGLPRKAFPNGWKGE |
| RSG.I.V.PGI...........D......DA..LATGY.SNVP.WL.....F..KDG.P...FPNGWKG. |
Retrocopy | RSGQITVVPGITRFTNSDAVLSDGTAVHVDAVILATGYRSNVPQWLRATDFFG-KDGYPKTEFPNGWKGQ |
|
Parental | RGLYSVGLTRRGLMGTSVDARRIAHDIEQ |
| .GLYSVG..RRG..G.S.DA.RIA.D..Q |
Retrocopy | FGLYSVGFARRGISGASADAVRIAKDLCQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_3 was not experimentally validated.
Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.