>retro_hvul_30
ATGGCTCGGCGAATCAATGGCGTCACTGCCGCCGCCTCCGCCAGCCTCCTCCTCGCCTTCCTCATGCCGGCTGCCGCGGA
CGGCGACGGCGGCGGGACAACGCGGTACAACGCCATGTTCAACTTCGGTGACTCGCTGTCGGACACGGGCAACCTCTGCG
TGAACAAGTCGGCGGCGGCGGAGCTCCTGCTCACCTTCGCCAACCCGCCCTACGGCATGACCTACTTCGGCCGCCCCACC
TGCCGCTGCTCCGACGGCCGGCTCGTCGTCGATTTCCTCGCGCAGTCGCTGGGCCTCCCTTTCCTTCCCCCGTCCAAGCT
CCCCGGCGCCGACTTCCGGAAGGGCGCCAACATGGCCATCATCGGCGGCACGGCGCTCGACTTCGAGTTCCTCAAGTCCA
TCGGCCTCGGCTACCCGATCTGGAACAACGGCGCCATCAACGTGCAGCTCCGGTGGTTCCGCGACCTGCTCCCGCGCGTC
TGCGGCGGGCCGCAGACCTGCAGGCCCTACCTCGCCAGGTCCCTCTTCCTCCTCGGCTCCATCGGCGGCAACGACTACAA
CGCCATGCTCTTCTTCGGCTTCAACGTCAGCCGGGCCAAGAGCTACGCCCCCAACGTGGTCGACAACATCGCCGCCGCCG
TCGAGAGGCTGATCGAGCTGGGCGCGGCGGACATCGTGGTGCCGGGCACGCTCCCCATCGGGTGCATCGCCGTCTACCTC
GCCATCCTCCCGAGCGGCGACAAGTCCGACTACGACGAGCGCGGCTGCCTCAAGCCGCTCAACGGCCTCGCCATGTACCA
CAACTCGCTGCTCCAGGACAGGCTCAACGGCGTCCGCGCCAGGCATGGCTCGGCGGTGAGGATCATGTACGCGGACTACT
ACGCCCACGCCGTCGACATGCTCCGTGACCCGGCGCGCTTCGGCTTCACCACGGTGATCACGGCGTGCTGCGGCGCGGGC
GGCGGCCCGTACAACTACGAGTTCGACGCGCGGTGCGGGATGAAGGGCGCGACCGCGTGTGCCGACCCGTGGAGGCATGA
GTCATGGGACGGCGTGCATCCGACGGAGGCGGTGAACAAGCTCGTCGCCGACGGGTGGCTCAGGGGACCATACTGTCACC
CTCCCATCCTGCAGTAA
ORF - retro_hvul_30 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
57.6 % |
Parental protein coverage: |
91.06 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | KYNAVYSFGDSITDTGNLCTNGRPSA---ITFTQPPYGETYFGSPTCRCSDGRVIVDFLSTKYGLPFLPP |
| .YNA...FGDS..DTGNLC.N....A....TF..PPYG.TYFG.PTCRCSDGR..VDFL....GLPFLPP |
Retrocopy | RYNAMFNFGDSLSDTGNLCVNKSAAAELLLTFANPPYGMTYFGRPTCRCSDGRLVVDFLAQSLGLPFLPP |
|
Parental | SKSTSADFKKGANMAITGATAMDAPFFRSLGLSDKIWNNGPISFQLQWFQTITSSVCGS--SCKSYLANS |
| SK...ADF.KGANMAI.G.TA.D..F..S.GL...IWNNG.I..QL.WF......VCG....C..YLA.S |
Retrocopy | SKLPGADFRKGANMAIIGGTALDFEFLKSIGLGYPIWNNGAINVQLRWFRDLLPRVCGGPQTCRPYLARS |
|
Parental | LFIFGEFGGNDYNAMLFGNYNTDQASTYAPQIVDTISAGVEKLVAMGATDVVVPGVLPIGCFPIYLTIYG |
| LF..G..GGNDYNAMLF...N...A..YAP..VD.I.A.VE.L...GA.D.VVPG.LPIGC...YL.I.. |
Retrocopy | LFLLGSIGGNDYNAMLFFGFNVSRAKSYAPNVVDNIAAAVERLIELGAADIVVPGTLPIGCIAVYLAILP |
|
Parental | TSSAADYDSLGCLKKFNDLSTYHNSLLQAKVSTLQAKYKSA-RIMYADFYAGVYDMVRSPSKYGFSSVFE |
| .....DYD..GCLK..N.L..YHNSLLQ.......A...SA.RIMYAD.YA...DM.R.P...GF..V.. |
Retrocopy | SGDKSDYDERGCLKPLNGLAMYHNSLLQDRLNGVRARHGSAVRIMYADYYAHAVDMLRDPARFGFTTVIT |
|
Parental | ACCGSGGGKYNYANSARCGMSGASACASPASHLSWDGIHLTEAAYKQITDGWLNGAFCHPAI |
| ACCG.GGG.YNY...ARCGM.GA.ACA.P..H.SWDG.H.TEA..K...DGWL.G..CHP.I |
Retrocopy | ACCGAGGGPYNYEFDARCGMKGATACADPWRHESWDGVHPTEAVNKLVADGWLRGPYCHPPI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_30 was not experimentally validated.
Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.