>retro_hvul_31
CCGGAGAGCGTCGCCTTCGACGCCAAAGGGCACGGCCCATACAGCGGCGTCTCCGACGGCCGCGTGCTCAGGTGGAACGG
CGACGCGCTCGGCTGGTCGACCTACACCTACAACCCCGACTACAGCAGCGAGGCGTGCACGGCGTCCGTCTTCCGCCCGG
AGACGGCCACGGAGAGCCACTGCGGACGCCCGCTAGGCCTGCGGTTCCACCTCAAGTCCGGGTACCTGTACATCGCCGAC
GCCTACAAGGGGCTCATGAGGGTCGCGCCCGGCGGTGGGGAGGCGACTGTGCTGGTCACGGAGGTTGACGGCGCACCTCT
CCGCTTCACCAACGGCGTGGACGTCGACCAAGTCACCGGCGAGGTTTATTTCACAGACAGCTCCACCAACTTCAATAGGT
CGCAGCATGAGATGGTGACAAGAACCGGAGACTCGACGGGACGGCTAATGAGGTACGACCCACGGACGGGGAAGGCCGTC
GTGCTCCAGGCCGGCATCACTTACCCCAATGGTCTTGCCATCAGCGCTGATAGGACGCATCTCATCATCTCGTCGACCGG
GCCGTGTAAGCTGCTACGATACTGGATCAAGGGCTCCAAGGCGGGCACGATGGAGCTATTCGCCGACCTTCCTGGCTATC
CAGACAATGTAAGGCCCGACAAGAAAGGAGGATATTGGGTGGCACTACACCGTGAAAAGAATGAGCTCCCCTTTGGCATT
GATAGCCACTTGCTAGCCTTGAGGATTGATGCCCATGGAAAAATTACTGAAGAGATGAGGGGGCCCAAGAGCGTGAGGCC
GACCGAGGTGGTGGAGAGGAGAGGAGGCAAATTGTTCATGGGATCCGTCGAGCTTCGCTATGTCTCC
ORF - retro_hvul_31 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
54.79 % |
Parental protein coverage: |
69.52 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | PESIVFDHRGGGPYTGVSNGRVLRWRGNRRHHGWTEFAHNYKHKTVAECAAK-KKLVEPESACGRPLGLQ |
| PES..FD..G.GPY.GVS.GRVLRW.G.....GW.....N......A..A.........ES.CGRPLGL. |
Retrocopy | PESVAFDAKGHGPYSGVSDGRVLRWNGDAL--GWSTYTYNPDYSSEACTASVFRPETATESHCGRPLGLR |
|
Parental | FHHASGDMYIADAYLGLMRVGRCGGLAEVVATETGGVPFNFLNGVDVDQETGDVYFTDSSTVYPRSEYMM |
| FH..SG..YIADAY.GLMRV...GG.A.V..TE..G.P..F.NGVDVDQ.TG.VYFTDSST...RS...M |
Retrocopy | FHLKSGYLYIADAYKGLMRVAPGGGEATVLVTEVDGAPLRFTNGVDVDQVTGEVYFTDSSTNFNRSQHEM |
|
Parental | VVLTGDATGRLMRYDPRTGNVTVLRSGLAFPNGVAVSADRTHLVVAETSSCRLLRHWLRGPAAGTTEVLA |
| V..TGD.TGRLMRYDPRTG...VL..G...PNG.A.SADRTHL....T..C.LLR.W..G..AGT.E..A |
Retrocopy | VTRTGDSTGRLMRYDPRTGKAVVLQAGITYPNGLAISADRTHLIISSTGPCKLLRYWIKGSKAGTMELFA |
|
Parental | DLPGYPDNVRPDGGGRGGYWVGMNRDKQWAESGTTANSMSAVRVVVDGGAT |
| DLPGYPDNVRPD....GGYWV...R.K.....G.......A.R....G..T |
Retrocopy | DLPGYPDNVRPD--KKGGYWVALHREKNELPFGIDSH-LLALRIDAHGKIT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_31 was not experimentally validated.
Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.