>retro_hvul_33
ATGAGGATGTCCTTTCCTTTTGAGCTTGGTGATGATGACCACTCCTTGCAGGAATGTCACCTTACTGAAGGGGATACGGG
GACTTCTGTCTGGCACGTTGCAGAGGCTATCCATAGGTTAGAGCTTGCCTTTGGGGCCATCCCCAATGTAAGAGCTAAGG
GTGTGGCATCAACCAGAGCTGCCCAGCTGCTCAACCATATGCATCTCCAAGACCCTGTCGACATGGATGATATGGGGGTT
CCGGAGATAGAGACCGTTATTCTGCTGGACCGAGAGGTGGATATGGTGACACCAATGTGCTCTCAGCTGACGTACGAAGG
CCTATTAGACGAGATGTTGGAAATTCATAACGGATCCGTGGAAGTTGACGCCTGCGTTATGGACTCCCAACAAGATGGAA
AAAAGGTCAAGGTTCCACTCAATTCGAGCGATAAGTTGTACAGGGAGATTCGAGACCTCAACTTCCATGTTGTGCTTAAG
GTCGTCCACCAAAAGGCAATGGCTATTCAGCAAGATTACGCGCAAGTGAAATCCACAAACACACATTCGGTCTCTGAGAT
CAAGGATTTCGTGAAGAGGTTATACTCGCTACCTGAGATAACCAGGCATGTTAATTTGACGCATCATTTGCAATCGGTTG
TGAGAAAACTCTCATTCCATGCCCGAGTGGAGATTGAACAAAAGATACTGGAGGCGCAGGACTATGAAACGTGTTACAAG
TACATTGAGGAGATCATACAGAAGCAAGAGCCTATTGAAACCGTGCTTCGCCTTCTAGTGTTATTTTCCCTTACAAATGC
CGGATTGCCGAGGAAGAGTTTCGACTACCTGAGACAGGAGATACTGCACAGCTATGGCTTCGAGCACATGCCCTTGTTGT
ACAATCTGGAGAAAGCTGGCCTTGTTAAAAGGCGGGAATCGAGGAGTAATTGGGCTGTTATCAGGAGAGCTCTCAAGCTT
ATAGTTGATATAAAGGATCCTAATGATCCCCCTGATGATATATTATACGTCTTTGCTGGATACGCGCCTCTTAGTGTTCG
CCTTGTTGAGCACGCAGTGAGGTCTGGATGGCGATCTATTGAAGAAGTGTTGAAATTATTGCCAGGTCCTCATCTTGATT
TGAAAAGAGGTGTTTCGGCCATTAGTGGTTCAGCAGAATTGCTACCACACAGGGCACAGCAGAATGCCGACGGGGTTGGT
CGTCGTTCCGTTGTTCTGGTTGTGTTTGTTGGTGGCGTAACATTTGCTGAGATTGCCACGCTTCGATTTCTTGGTGCACA
GGAAGGAATGGGCTGTGACTTCGTGGTTGCAACAACAAAAGTCATCACTGGCAACACATTACTGAGACCAATCATAGCCA
GCAGCAAAGAG
ORF - retro_hvul_33 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.1 % |
Parental protein coverage: |
99.24 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MQLEDPVSMDNMGIPEIDTVILLDREVDMVTPMCSQLTYEGLLDEMLEIHNGSVEVDASIMGAQQDGKKV |
| M.L.DPV.MD.MG.PEI.TVILLDREVDMVTPMCSQLTYEGLLDEMLEIHNGSVEVDA..M..QQDGKKV |
Retrocopy | MHLQDPVDMDDMGVPEIETVILLDREVDMVTPMCSQLTYEGLLDEMLEIHNGSVEVDACVMDSQQDGKKV |
|
Parental | KVPLNSSDKLYKEIRDLNLHVVVQVVRQKATSIQQDYAEVKSTNTQSVSELKDFVKRLHSLPEIARHVNL |
| KVPLNSSDKLY.EIRDLN.HVV..VV.QKA..IQQDYA.VKSTNT.SVSE.KDFVKRL.SLPEI.RHVNL |
Retrocopy | KVPLNSSDKLYREIRDLNFHVVLKVVHQKAMAIQQDYAQVKSTNTHSVSEIKDFVKRLYSLPEITRHVNL |
|
Parental | AQHLQSFAAKPAFHARVEIEQIILEAQTYETCYEYIEEIIQKQEPIETVLRLLVLFSLTNAGLPKKNFDY |
| ..HLQS...K..FHARVEIEQ.ILEAQ.YETCY.YIEEIIQKQEPIETVLRLLVLFSLTNAGLP.K.FDY |
Retrocopy | THHLQSVVRKLSFHARVEIEQKILEAQDYETCYKYIEEIIQKQEPIETVLRLLVLFSLTNAGLPRKSFDY |
|
Parental | LRREILHSYGFEHMPLLYNLEKAGLVKRQESRTNWPVISRALQLIVDIKDPEN-PDDIAYIFAGYAPLSI |
| LR.EILHSYGFEHMPLLYNLEKAGLVKR.ESR.NW.VI.RAL.LIVDIKDP...PDDI.Y.FAGYAPLS. |
Retrocopy | LRQEILHSYGFEHMPLLYNLEKAGLVKRRESRSNWAVIRRALKLIVDIKDPNDPPDDILYVFAGYAPLSV |
|
Parental | RLVQHAVRSGWRSIEELLKLLPGPHLDFKRGISTISSSELLPGSGSQQSTDRVGHRSLVLVVFIGGVTSA |
| RLV.HAVRSGWRSIEE.LKLLPGPHLD.KRG.S.IS.S..L.....QQ..D.VG.RS.VLVVF.GGVT.A |
Retrocopy | RLVEHAVRSGWRSIEEVLKLLPGPHLDLKRGVSAISGSAELLPHRAQQNADGVGRRSVVLVVFVGGVTFA |
|
Parental | EIAALRFLSAQEGMGYDFLVATTKVITGNTLLRPIIASSKE |
| EIA.LRFL.AQEGMG.DF.VATTKVITGNTLLRPIIASSKE |
Retrocopy | EIATLRFLGAQEGMGCDFVVATTKVITGNTLLRPIIASSKE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_33 was not experimentally validated.
Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.