>retro_hvul_5
ATGCTGGCGGCGCTGCGGGATTGGAAGATCGCGTCGGCGTACGAGACGTTTCCGTGGGAGAAGAAGATGAAGTCGCTGCT
GCCGGTGCCGGAGTCGAGCCGGTTCCTGTCGCTGCTGCTGCTCCCCAAGGCCACGGACGGCACCCACACCCGCTACAACT
CGCTGGACGACACCCTCGCCCGCGCCGACGCCTGGCTCGCCTCGTCCCGCGCCTCCGGTGTCCCCGTCGAGCTCGCCAGC
GTCCAGACGGAGGCGCTGCTCACCAAGATCTCCGGCGAGACGGCGGTGTCCACGGTGAACATGGGGTCCCTGTCCGACCT
GGCCAACATGTCCAACGTGAGCCTGTACGGGTTCGAGGACTACCACGGCGTGGACATCGGCGTGGTGCGCGCGGTGCGGC
TGTGGTACGCGCCGTCGGGCCCCGGCGGCGAGATGGCGGTGGAGATCGCGCTGCGGCAGGGGGACACCAGGCTCGGCTTC
GCCATCAGCCGGACCGAGGAAGGGTTCATCTACGTGTCGTCGGTGGCGGACGAGAGCACGCCCGGCGTGGCGTCCACGCG
GTCGGGGCTGCTCGAGCTGCACCGGGCGGCGAGGCGGGCGGGCAGGCTGCTGGTGGTTTCGAGGGTGGGAGGGGAGAAGG
TGCTGCCGTGGCTGGTCTCCACCGCCGGCGACGTCAGGTGCTACGACACCGTGTCGCTGAGCCAGAAGCTCTCGCTGCAC
CGCCACGCGCTCCGCCCCATCACGCTGCACTTCCTCACGTGGGACGAGGGCGCCCTCGCCCTGCCTCCGCCGCCGGCGCC
GGCGCCGCTGCTCATGCTGTCGTCCGAAGGCGACGAGGAGGAGATCGATGGCGACGGGCCGGAGATCGCGGCCGGCAAGG
GCGGCAAGGGCTCGTCCTTTAGGTTCCAGAACATCGGACTACCGGATAGCTGGCTGTGA
ORF - retro_hvul_5 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
63.7 % |
Parental protein coverage: |
69.07 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | VVCALSKAQLQDGYVSYPWEKKMKEVLPVPSSSSFLSLLVLPTALDRANSRYNSVDDTLARANAWFLSSQ |
| ...AL........Y...PWEKKMK..LPVP.SS.FLSLL.LP.A.D....RYNS.DDTLARA.AW..SS. |
Retrocopy | MLAALRDWKIASAYETFPWEKKMKSLLPVPESSRFLSLLLLPKATDGTHTRYNSLDDTLARADAWLASSR |
|
Parental | AAGVPIAFLNVQTEALLTKISGDMASATVNSGSLADLPNLANASLYGFEDYHGVDIGVVKAVRLWF--TA |
| A.GVP.....VQTEALLTKISG..A..TVN.GSL.DL.N..N.SLYGFEDYHGVDIGVV.AVRLW..... |
Retrocopy | ASGVPVELASVQTEALLTKISGETAVSTVNMGSLSDLANMSNVSLYGFEDYHGVDIGVVRAVRLWYAPSG |
|
Parental | AAGEMPVEIILDEGDTKLGFAISRTEEGFLYISSVMEDDGDRPAPSTRSGLRDLYREAKRASKLLVISRV |
| ..GEM.VEI.L..GDT.LGFAISRTEEGF.Y.SSV..D.......STRSGL..L.R.A.RA..LLV.SRV |
Retrocopy | PGGEMAVEIALRQGDTRLGFAISRTEEGFIYVSSV-ADESTPGVASTRSGLLELHRAARRAGRLLVVSRV |
|
Parental | SCRKVLPWMVSTSGAIRCFDTVSLSQKLSLHRHALRPILLHVLMWDFGTDAPNRPAQGAP |
| ...KVLPW.VST.G..RC.DTVSLSQKLSLHRHALRPI.LH.L.WD.G..A...P...AP |
Retrocopy | GGEKVLPWLVSTAGDVRCYDTVSLSQKLSLHRHALRPITLHFLTWDEGALALPPPPAPAP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_5 was not experimentally validated.
Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.