>retro_hvul_50
GGCAGCCTCCGTAGGGTTTTACCTGATGCGGCGCCCGAAACCGGGGAGGCGATTGATGGAATCCTGGAGGACGTAGGGCA
ACACATCCTCCCTGGACTCACACACTTCCAGAGCCCCAACTTCTTTGCCTACTACCCTGCCAACGCCAGCACTGCCGGCT
TCGTCGGCGAGATGCTCTGCGCCGGCCTCAACGTCGTACCTTTCACATGGGCCGCCTCGCCTATGGCAACCGAGCTTGAA
TGCCTCATGCTGGACTGGATGGGCAAGCTCATGTGCCTTCCGGACCGCTTCCTCTTCTCAGGCAGCGGCGGCGGCGGCGG
CGTGCTGCACGGAAGCACATGCGAGTCTGTGGTATGCACCCTTGCCGCCGCACGGGACCGCGCGCTCAAACGGCTCATGA
CCCATGAAGCCATCCTGAAGCTGGTGGTGTACGCCTCGGACCAGAGCCACACCACCTTCCAGAAGGGGGCCAGGATTGTA
GGGATCCCGCCGTCAAACTTCCGTGTCATCCCGACGTCGGCCGCGTCCAGCTACGGCCTGACCGCCGAGAGCGTCCGGGA
CGCGGTGGAGGCGGACCTCGCCAGCGGGCTCGTGCCGCTCTACCTGTGCGCCACGGTGGGCACCACCGGCGTGGGCGCGG
TCGACCCGGTGGGTGAGCTCGGGGAGGTGGCGCGGCGCTACGGGATGTGGCTCCACGTCGACGCCGCCTACGCCGGCAGC
GCGCTCATCTGCCCCGAGTTCCAGGGTTACATGGAGGGCGCGGAGCTGGCAGACTCGGTGAGCATGAACCCGCACAAGTG
GTTCCTCACCAACATGGACTGCTGCTGTCTCTGGGTGGCCACCCCATCCCAGCTC
ORF - retro_hvul_50 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
50.18 % |
Parental protein coverage: |
76.01 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | GYLKELLPDSAPNRPDTLDTLFDDIREKIIPGVTHWQSPSYFAYYPSNSSTAGFLGEMLSAAFNIVGFSW |
| G.L...LPD.AP......D....D....I.PG.TH.QSP..FAYYP.N.STAGF.GEML.A..N.V.F.W |
Retrocopy | GSLRRVLPDAAPETGEAIDGILEDVGQHILPGLTHFQSPNFFAYYPANASTAGFVGEMLCAGLNVVPFTW |
|
Parental | ITSPAATELEVIVLDWFAKMLKLPSQ--FLSDAPGGGVIQGTASEAVLVVLLAARDRTLKK-HGKKSLEK |
| ..SP.ATELE...LDW..K...LP....F...........G...E.V...L.AARDR.LK.........K |
Retrocopy | AASPMATELECLMLDWMGKLMCLPDRFLFSGXXXXXXXLHGSTCESVVCTLAAARDRALKRLMTHEAILK |
|
Parental | LVVYASDQTHSALQKACQIAGIFPENFRVVKADCSKNYAVAPEAVTEAISVDLSSGLIPFFICATVGTTS |
| LVVYASDQ.H...QK...I.GI.P.NFRV........Y....E.V..A...DL.SGL.P...CATVGTT. |
Retrocopy | LVVYASDQSHTTFQKGARIVGIPPSNFRVIPTSAASSYGLTAESVRDAVEADLASGLVPLYLCATVGTTG |
|
Parental | SSAVDPLPELGNIAQGHDMWFHIDAAYAGSACICPEYRHHLDGVEKADSFNMNAHKWFLTNFDCSLLWVK |
| ..AVDP..ELG..A....MW.H.DAAYAGSA.ICPE......G.E.ADS..MN.HKWFLTN.DC..LWV. |
Retrocopy | VGAVDPVGELGEVARRYGMWLHVDAAYAGSALICPEFQGYMEGAELADSVSMNPHKWFLTNMDCCCLWVA |
|
Parental | DRSYL |
| ..S.L |
Retrocopy | TPSQL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_50 was not experimentally validated.
Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.