RetrogeneDB ID: | retro_hvul_52 | ||
Retrocopylocation | Organism: | Barley (Hordeum vulgare) | |
Coordinates: | 3:10613082..10613562(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | MLOC_10618 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.25 % |
Parental protein coverage: | 56.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AATQASTTKSHNAPRSRPANAPSAPAKQIQAI-KFSNDTERLQHINSVRKSPVGAQIKLVIELLYKTRLA |
....A.......AP.SRPA..PS..A....A...FS.DT.RLQ.IN.VR.S.VG.Q.K.VI.LL.KTR.A | |
Retrocopy | SSSSAKPCHQQPAPTSRPAAKPSTSAPAPAAVVRFSDDTARLQKINDVRRSTVGRQMKTVIDLLDKTREA |
Parental | YTAEQINEATYVAINSNKAVFDSLTNNPKVQFDGKRFSYKSKHDLKGKDQLLHLIRRFPEGLPVVEVKDS |
.TA.QINE.TYV.I..N.....SL.NNPKV.FDG.RFSYK..HD..GK..LL.LI..FP.GLP..EVK.. | |
Retrocopy | LTAHQINEQTYVDIDGNRTLAESLRNNPKVRFDGQRFSYKPTHDVAGKAELLTLIKSFPDGLPASEVKKA |
Parental | YPTVLDDLQALKASGDVWWL |
YP.V.DDL.AL..SGDV..L | |
Retrocopy | YPAVEDDLRALGSSGDVYLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Aegilops tauschii | F775_06457 | 1 retrocopy | |
Hordeum vulgare | MLOC_10618 | 1 retrocopy |
retro_hvul_52 ,
|
Triticum aestivum | Traes_4AS_90C3255FC | 1 retrocopy |