>retro_hvul_57
AATGACACCACCTACTTCGGCGCGCTGGTGGGGCGGGTGGCGAACCGGATCGCCGGCGGGCGGTTCACGATCAAGGACCA
CGCGTACCACACCTACACGAACGACGGCAACAACACGCTCCACGGCGGCCACCGCGGGTTCAACCAGGTGTTCTGGTCGG
TGCGGGAGCGGGTCACCGGCGCCTTCCCCTACATCACCTTCTACTACCGCAGCGGCGACGGCGAGGAGGGCTTCCCGGGC
GCGCTGGACGTGCTGGTGACCTACAAGATCGACGGCGACTACTCGTACAGCGTCACCATGTACGCCCGGCCGGTGGACAA
GCCGACGCCCGTGAACCTGGCGCAGCACACGTACTGGAACCTGCGCGGGCACGGGCGGGGCACCGTCCTGGACCACTCCG
TCCAGATCTTCGCGTCGGCCGTCACCCCCGTCGGCGGCGACCTGATCCCGACGGGCGCCGTGACGCCCGTCGCCGGCACG
CCCTTCGACTTCCGCGCCCCGGCGGCGGCCGGCGCGCGCATCGCGGAGGTGGAGGGCGGCTACGACATCAACTACGTCCT
GGACGGCGCGGACGCGGACGGGCAGGGGGTGCGCAAGGTGGCGGTGGTGAGCGAGGCGACGTCCGGGCGGGTGATGGAGC
TGTGGGGCGACCAGCCCGGCGTGCAGTTCTACACCGGCAACTTCCTCAAGGGCGAGCAGGGCAAGGGCGGCGCCGTGTAC
GAGAAGCACGGCGGGCTGTGCCTGGAGACGCAGGACTTCCCCGACGCCGTGCACAACCCCAAGTTCCCCACCGAGATCTA
CCGCAAAGGCCAGGTCTACAAGCACTACATGCTCTACAAGTTCTCG
ORF - retro_hvul_57 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
58.19 % |
Parental protein coverage: |
77.96 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | NGTAYFGGLIGRVANRIANARFTLDGKSYRLFPNDGNNTLHGGHRGFDKVVWTVKEHVAGGRSPFITLYY |
| N.T.YFG.L.GRVANRIA..RFT.....Y....NDGNNTLHGGHRGF..V.W.V.E.V.G...P.IT.YY |
Retrocopy | NDTTYFGALVGRVANRIAGGRFTIKDHAYHTYTNDGNNTLHGGHRGFNQVFWSVRERVTGA-FPYITFYY |
|
Parental | HSFDGEQGFPGDVDVHVTYQITGRHALSVRMNATARSKATPVNLAHHAYWNLGGDGSGSVLGQKIRLFAS |
| .S.DGE.GFPG..DV.VTY.I.G....SV.M.A....K.TPVNLA.H.YWNL.G.G.G.VL......FAS |
Retrocopy | RSGDGEEGFPGALDVLVTYKIDGDYSYSVTMYARPVDKPTPVNLAQHTYWNLRGHGRGTVLDHSVQIFAS |
|
Parental | RYTPVDAALIPTGRLAPVAGTPYDFRRPAAVGARIGGLLSRGVAGYDINYVVDG----GRGLRRVAAVRD |
| ..TPV...LIPTG...PVAGTP.DFR.PAA.....G........GYDINYV.DG....G.G.R.VA.V.. |
Retrocopy | AVTPVGGDLIPTGAVTPVAGTPFDFRAPAAA----GARIAEVEGGYDINYVLDGADADGQGVRKVAVVSE |
|
Parental | GASGRAMELWADQPGVQFYTANGLSGVRGKGGKVYGRYGALCLETQGFPNAVNEPSFPSQIVRPGKVYRH |
| ..SGR.MELW.DQPGVQFYT.N.L.G..GKGG.VY...G.LCLETQ.FP.AV..P.FP..I.R.G.VY.H |
Retrocopy | ATSGRVMELWGDQPGVQFYTGNFLKGEQGKGGAVYEKHGGLCLETQDFPDAVHNPKFPTEIYRKGQVYKH |
|
Parental | HMLFRFS |
| .ML..FS |
Retrocopy | YMLYKFS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_57 was not experimentally validated.
Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.