RetrogeneDB ID: | retro_hvul_62 | ||
Retrocopylocation | Organism: | Barley (Hordeum vulgare) | |
Coordinates: | 4:242687820..242688112(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | MLOC_27966 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 50.47 % |
Parental protein coverage: | 73.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | NSNAKVQFSKEPNNLYNVHSYKY-SGLANKKT-VTVQPAAEKEMTVVLSTTKSKKQNKPAAFTHKTVMRK |
NS.A.VQFSKE.N.LYNVHS......L.NK.T........E.........T....Q.KP.AF.....M.K | |
Retrocopy | NSTAPVQFSKETNYLYNVHSCWF<FDLSNKNT<MVLVAEKEMTVVLLTTKTMTQ-QTKPSAFFAR--MHK |
Parental | EFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSL |
EFR.M..AVKNQV..NYY....TKPALARLS..YR.L | |
Retrocopy | EFR*MDNAVKNQVTGNYY---MTKPALARLS-IYRNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Hordeum vulgare | MLOC_27966 | 2 retrocopies |
retro_hvul_61, retro_hvul_62 ,
|
Triticum aestivum | Traes_3DL_E7983BF89 | 1 retrocopy |