>retro_hvul_70
ATGTCGGTCTTAATCGTCACCAGCGTGGGCGATCTCGTGGTGGATCTCCACACCGATCGGTGCCCCCGCACCACCTACAA
CTTCCTCAAGCTCTGCAAGATGAAGTACTACAACGGGTGCCTGTTCCACAAGGTGGCCAAGGATTTCGTGGCACAGACCG
GGGACCCGACCGGGACCGGGACTGGCGGCGATTCGGTGTACAAGTTCCTCCACGGTGATCAGGCTCGATTCTTCGACGAC
GAGATCCACCCGGAACTGAGGCATTCGAAGATCGGCACCGTTGCCATGGCAAGCGCCGGCAAAAACCGCAACGCCGCGCA
GTTCTACATCACACTGCGGGACGACGTGGAATACCTTATGATAAACACACCGTGTTTGGGATAGTTGCTGAAGGTGAAGG
TCTTGACACGCTGACGAAGATAAACGAATCATATGTTGATGGCGATGGGAGACCATTCAAGGACATAAGGATTAAACATA
CATGTGTCTTGTACGACCCTGACGACGATCCTGCCCAGCTTGCTGAACTCATTCCTGCAAATTCTCCCGTTGGAAAGCCA
ATCGAGGAGATTTCAGAAGAGCGCTTAGAGGATACCTGGGTCCCTCTCGATGAAACAGTGGACCCTGTGCAGCTTGAGGG
GATGATCCGTTCGAAAGAAGCGCATACAAATGCCGTGATCCTTGCTAGTATTGGAGACATTCCAGATGCCGAGGTCAAGC
CACCAGACAATGTCTTGTTTGTCTGTCAACTCAACCCACTGACACAGGATGAGGACCTGTATACGATATTTTCTCGCTTC
GGAACGGTGACATCGGCCGAAACAATCCGTGACTACAAGACTGATCACAGCTTGTGCTATGCTTTTGTTGAGTTCGAAGC
AAAGGAAGCCTGCGAGCGTGCACACAGGGATATGAACAATTGTCTGATTGATGACCGGAGAATTCAAGTTGATTTTAGCC
AGAGCGTTTCAAAGCTGTGGCGTCAGTTCAGACAGGGCACTCGGAATGCAAATAAAGATGGGTGCTGCAAGAGTCATGCC
CCTGATTATCGAGCCCGAGATCGGGATAAGGGTGCTGAGAAGAAAAACAAAGGACCGAGATTATGTTCTGAAAGATGAAA
ACACTCAGCTAGGCGGCAGTAAACGTGGAAGTTATGATTTAGTCTTTGATGAGGACGGTGCT
ORF - retro_hvul_70 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.28 % |
Parental protein coverage: |
70.13 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MSVLIVTSVGDIELDLHTDLCPLTTKNFLKLCKMKYYNGCLFHKVEKDFLAQSGDPTGTGSGGDSVYKFL |
| MSVLIVTSVGD...DLHTD.CP.TT.NFLKLCKMKYYNGCLFHKV.KDF.AQ.GDPTGTG.GGDSVYKFL |
Retrocopy | MSVLIVTSVGDLVVDLHTDRCPRTTYNFLKLCKMKYYNGCLFHKVAKDFVAQTGDPTGTGTGGDSVYKFL |
|
Parental | YGDQARFFNDEIRPELRHSKTGTIAMASAGENCNASQFYITLRDDVDYLD-DKHTVFGTVAEG--LDTLT |
| .GDQARFF.DEI.PELRHSK.GT.AMASAG.N.NA.QFYITLRDDV.YL..DKHTVFG.VAEG..LDTLT |
Retrocopy | HGDQARFFDDEIHPELRHSKIGTVAMASAGKNRNAAQFYITLRDDVEYLM<DKHTVFGIVAEGEGLDTLT |
|
Parental | KINEAYVDDKGRPFKDIRIKHTYILDDPFDDPPQLAEFIPENSPLGKPHDEVAEERLEDSWVPLDETVDP |
| KINE.YVD..GRPFKDIRIKHT..L.DP.DDP.QLAE.IP.NSP.GKP..E..EERLED.WVPLDETVDP |
Retrocopy | KINESYVDGDGRPFKDIRIKHTCVLYDPDDDPAQLAELIPANSPVGKPIEEISEERLEDTWVPLDETVDP |
|
Parental | GQLEELIRSKEAHANAVILESVGDIPDAEVKPPDNVLFVCKLNPVTQDEDLYTIFSRFGSVTSAEIIRDF |
| .QLE..IRSKEAH.NAVIL.S.GDIPDAEVKPPDNVLFVC.LNP.TQDEDLYTIFSRFG.VTSAE.IRD. |
Retrocopy | VQLEGMIRSKEAHTNAVILASIGDIPDAEVKPPDNVLFVCQLNPLTQDEDLYTIFSRFGTVTSAETIRDY |
|
Parental | KTGDSLCYAFIEFEAKEACERAYFKMDNCLIDDRRIHVDFSQSVSKLWGQFRQSKRNGNKDGCFKCGAPD |
| KT..SLCYAF.EFEAKEACERA...M.NCLIDDRRI.VDFSQSVSKLW.QFRQ..RN.NKDGC.K..APD |
Retrocopy | KTDHSLCYAFVEFEAKEACERAHRDMNNCLIDDRRIQVDFSQSVSKLWRQFRQGTRNANKDGCCKSHAPD |
|
Parental | HIARDCDQDGEQKPKAP-NYVLKDDNTQRGGNNRRSYDFVFEDDTA |
| ..ARD.D...E.K.K.P..YVLKD.NTQ.GG..R.SYD.VF..D.A |
Retrocopy | YRARDRDKGAEKKNKGP>DYVLKDENTQLGGSKRGSYDLVFDEDGA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_70 was not experimentally validated.
Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.